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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

205 related items for PubMed ID: 21599929

  • 1. CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation.
    Kumar S, Carlsen T, Mevik BH, Enger P, Blaalid R, Shalchian-Tabrizi K, Kauserud H.
    BMC Bioinformatics; 2011 May 20; 12():182. PubMed ID: 21599929
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  • 5. Systematic processing of ribosomal RNA gene amplicon sequencing data.
    Tremblay J, Yergeau E.
    Gigascience; 2019 Dec 01; 8(12):. PubMed ID: 31816087
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  • 7. PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data.
    Anslan S, Bahram M, Hiiesalu I, Tedersoo L.
    Mol Ecol Resour; 2017 Nov 01; 17(6):e234-e240. PubMed ID: 28544559
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  • 8. CoMA - an intuitive and user-friendly pipeline for amplicon-sequencing data analysis.
    Hupfauf S, Etemadi M, Fernández-Delgado Juárez M, Gómez-Brandón M, Insam H, Podmirseg SM.
    PLoS One; 2020 Nov 01; 15(12):e0243241. PubMed ID: 33264369
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  • 9. SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.
    Dufresne Y, Lejzerowicz F, Perret-Gentil LA, Pawlowski J, Cordier T.
    BMC Bioinformatics; 2019 Feb 19; 20(1):88. PubMed ID: 30782112
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  • 10. Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.
    Welzel M, Lange A, Heider D, Schwarz M, Freisleben B, Jensen M, Boenigk J, Beisser D.
    BMC Bioinformatics; 2020 Nov 16; 21(1):526. PubMed ID: 33198651
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  • 12. BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.
    Fosso B, Santamaria M, Marzano M, Alonso-Alemany D, Valiente G, Donvito G, Monaco A, Notarangelo P, Pesole G.
    BMC Bioinformatics; 2015 Jul 01; 16():203. PubMed ID: 26130132
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  • 13. LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis.
    Özkurt E, Fritscher J, Soranzo N, Ng DYK, Davey RP, Bahram M, Hildebrand F.
    Microbiome; 2022 Oct 19; 10(1):176. PubMed ID: 36258257
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  • 15. MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.
    Albanese D, Fontana P, De Filippo C, Cavalieri D, Donati C.
    Sci Rep; 2015 May 19; 5():9743. PubMed ID: 25988396
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  • 17. CloudDOE: a user-friendly tool for deploying Hadoop clouds and analyzing high-throughput sequencing data with MapReduce.
    Chung WC, Chen CC, Ho JM, Lin CY, Hsu WL, Wang YC, Lee DT, Lai F, Huang CW, Chang YJ.
    PLoS One; 2014 May 19; 9(6):e98146. PubMed ID: 24897343
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