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Journal Abstract Search

293 related items for PubMed ID: 21690655

  • 1. CASSys: an integrated software-system for the interactive analysis of ChIP-seq data.
    Alawi M, Kurtz S, Beckstette M.
    J Integr Bioinform; 2011 Jun 21; 8(2):155. PubMed ID: 21690655
    [Abstract] [Full Text] [Related]

  • 2. Integrative analysis of ChIP-chip and ChIP-seq dataset.
    Zhu LJ.
    Methods Mol Biol; 2013 Jun 21; 1067():105-24. PubMed ID: 23975789
    [Abstract] [Full Text] [Related]

  • 3. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.
    Lefrançois P, Zheng W, Snyder M.
    Methods Enzymol; 2010 Jun 21; 470():77-104. PubMed ID: 20946807
    [Abstract] [Full Text] [Related]

  • 4. Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts.
    Szalkowski AM, Schmid CD.
    Brief Bioinform; 2011 Nov 21; 12(6):626-33. PubMed ID: 21059603
    [Abstract] [Full Text] [Related]

  • 5. Visualizing and characterizing in vivo DNA-binding events and direct target genes of plant transcription factors.
    Muiño JM, Angenent GC, Kaufmann K.
    Methods Mol Biol; 2011 Nov 21; 754():293-305. PubMed ID: 21720960
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  • 9. An integrated software system for analyzing ChIP-chip and ChIP-seq data.
    Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH.
    Nat Biotechnol; 2008 Nov 21; 26(11):1293-300. PubMed ID: 18978777
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  • 10. Mapping protein-DNA interactions using ChIP-sequencing.
    Massie CE, Mills IG.
    Methods Mol Biol; 2012 Nov 21; 809():157-73. PubMed ID: 22113275
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  • 13. Genome-wide profiling of DNA-binding proteins using barcode-based multiplex Solexa sequencing.
    Raghav SK, Deplancke B.
    Methods Mol Biol; 2012 Nov 21; 786():247-62. PubMed ID: 21938631
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  • 14. Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.
    Johannes F, Wardenaar R, Colomé-Tatché M, Mousson F, de Graaf P, Mokry M, Guryev V, Timmers HT, Cuppen E, Jansen RC.
    Bioinformatics; 2010 Apr 15; 26(8):1000-6. PubMed ID: 20208068
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  • 17. Analyzing ChIP-seq data: preprocessing, normalization, differential identification, and binding pattern characterization.
    Taslim C, Huang K, Huang T, Lin S.
    Methods Mol Biol; 2012 Apr 15; 802():275-91. PubMed ID: 22130887
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  • 18. Optimizing detection of transcription factor-binding sites in ChIP-seq experiments.
    Kallio A, Elo LL.
    Methods Mol Biol; 2013 Apr 15; 1038():181-91. PubMed ID: 23872976
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  • 19. Using CisGenome to analyze ChIP-chip and ChIP-seq data.
    Ji H, Jiang H, Ma W, Wong WH.
    Curr Protoc Bioinformatics; 2011 Mar 15; Chapter 2():Unit2.13. PubMed ID: 21400695
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  • 20. Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing.
    Hoffman BG, Jones SJ.
    J Endocrinol; 2009 Apr 15; 201(1):1-13. PubMed ID: 19136617
    [Abstract] [Full Text] [Related]

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