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Pubmed for Handhelds

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Journal Abstract Search

279 related items for PubMed ID: 21697129

  • 1. JSBML: a flexible Java library for working with SBML.
    Dräger A, Rodriguez N, Dumousseau M, Dörr A, Wrzodek C, Le Novère N, Zell A, Hucka M.
    Bioinformatics; 2011 Aug 01; 27(15):2167-8. PubMed ID: 21697129
    [Abstract] [Full Text] [Related]

  • 2. JSBML 1.0: providing a smorgasbord of options to encode systems biology models.
    Rodriguez N, Thomas A, Watanabe L, Vazirabad IY, Kofia V, Gómez HF, Mittag F, Matthes J, Rudolph J, Wrzodek F, Netz E, Diamantikos A, Eichner J, Keller R, Wrzodek C, Fröhlich S, Lewis NE, Myers CJ, Le Novère N, Palsson BØ, Hucka M, Dräger A.
    Bioinformatics; 2015 Oct 15; 31(20):3383-6. PubMed ID: 26079347
    [Abstract] [Full Text] [Related]

  • 3. LibSBML: an API library for SBML.
    Bornstein BJ, Keating SM, Jouraku A, Hucka M.
    Bioinformatics; 2008 Mar 15; 24(6):880-1. PubMed ID: 18252737
    [Abstract] [Full Text] [Related]

  • 4. SBMLToolbox: an SBML toolbox for MATLAB users.
    Keating SM, Bornstein BJ, Finney A, Hucka M.
    Bioinformatics; 2006 May 15; 22(10):1275-7. PubMed ID: 16574696
    [Abstract] [Full Text] [Related]

  • 5. LibSBMLSim: a reference implementation of fully functional SBML simulator.
    Takizawa H, Nakamura K, Tabira A, Chikahara Y, Matsui T, Hiroi N, Funahashi A.
    Bioinformatics; 2013 Jun 01; 29(11):1474-6. PubMed ID: 23564843
    [Abstract] [Full Text] [Related]

  • 6. Supporting SBML as a model exchange format in software applications.
    Keating SM, Le Novère N.
    Methods Mol Biol; 2013 Jun 01; 1021():201-25. PubMed ID: 23715987
    [Abstract] [Full Text] [Related]

  • 7. MathSBML: a package for manipulating SBML-based biological models.
    Shapiro BE, Hucka M, Finney A, Doyle J.
    Bioinformatics; 2004 Nov 01; 20(16):2829-31. PubMed ID: 15087311
    [Abstract] [Full Text] [Related]

  • 8. SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML).
    Rodriguez N, Donizelli M, Le Novère N.
    BMC Bioinformatics; 2007 Mar 06; 8():79. PubMed ID: 17341299
    [Abstract] [Full Text] [Related]

  • 9. A model diagram layout extension for SBML.
    Gauges R, Rost U, Sahle S, Wegner K.
    Bioinformatics; 2006 Aug 01; 22(15):1879-85. PubMed ID: 16709586
    [Abstract] [Full Text] [Related]

  • 10. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
    Zi Z, Klipp E.
    Bioinformatics; 2006 Nov 01; 22(21):2704-5. PubMed ID: 16926221
    [Abstract] [Full Text] [Related]

  • 11. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
    Hucka M, Bergmann FT, Dräger A, Hoops S, Keating SM, Le Novère N, Myers CJ, Olivier BG, Sahle S, Schaff JC, Smith LP, Waltemath D, Wilkinson DJ.
    J Integr Bioinform; 2018 Mar 09; 15(1):. PubMed ID: 29522418
    [Abstract] [Full Text] [Related]

  • 12. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
    Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J, SBML Forum.
    Bioinformatics; 2003 Mar 01; 19(4):524-31. PubMed ID: 12611808
    [Abstract] [Full Text] [Related]

  • 13. Automated manipulation of systems biology models using libSBML within Taverna workflows.
    Li P, Oinn T, Soiland S, Kell DB.
    Bioinformatics; 2008 Jan 15; 24(2):287-9. PubMed ID: 18056069
    [Abstract] [Full Text] [Related]

  • 14. SBML export interface for the systems biology toolbox for MATLAB.
    Schmidt H, Drews G, Vera J, Wolkenhauer O.
    Bioinformatics; 2007 May 15; 23(10):1297-8. PubMed ID: 17384017
    [Abstract] [Full Text] [Related]

  • 15. libRoadRunner: a high performance SBML simulation and analysis library.
    Somogyi ET, Bouteiller JM, Glazier JA, König M, Medley JK, Swat MH, Sauro HM.
    Bioinformatics; 2015 Oct 15; 31(20):3315-21. PubMed ID: 26085503
    [Abstract] [Full Text] [Related]

  • 16. MOCCASIN: converting MATLAB ODE models to SBML.
    Gómez HF, Hucka M, Keating SM, Nudelman G, Iber D, Sealfon SC.
    Bioinformatics; 2016 Jun 15; 32(12):1905-6. PubMed ID: 26861819
    [Abstract] [Full Text] [Related]

  • 17. SBML2L(A)T(E)X: conversion of SBML files into human-readable reports.
    Dräger A, Planatscher H, Motsou Wouamba D, Schröder A, Hucka M, Endler L, Golebiewski M, Müller W, Zell A.
    Bioinformatics; 2009 Jun 01; 25(11):1455-6. PubMed ID: 19307240
    [Abstract] [Full Text] [Related]

  • 18. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
    Hucka M, Bergmann FT, Chaouiya C, Dräger A, Hoops S, Keating SM, König M, Novère NL, Myers CJ, Olivier BG, Sahle S, Schaff JC, Sheriff R, Smith LP, Waltemath D, Wilkinson DJ, Zhang F.
    J Integr Bioinform; 2019 Jun 20; 16(2):. PubMed ID: 31219795
    [Abstract] [Full Text] [Related]

  • 19. libAnnotationSBML: a library for exploiting SBML annotations.
    Swainston N, Mendes P.
    Bioinformatics; 2009 Sep 01; 25(17):2292-3. PubMed ID: 19561017
    [Abstract] [Full Text] [Related]

  • 20. SBML2TikZ: supporting the SBML render extension in LaTeX.
    Shen SY, Bergmann F, Sauro HM.
    Bioinformatics; 2010 Nov 01; 26(21):2794-5. PubMed ID: 20829443
    [Abstract] [Full Text] [Related]

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