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Journal Abstract Search

196 related items for PubMed ID: 21745820

  • 1. Comprehensive exon array data processing method for quantitative analysis of alternative spliced variants.
    Chen P, Lepikhova T, Hu Y, Monni O, Hautaniemi S.
    Nucleic Acids Res; 2011 Oct; 39(18):e123. PubMed ID: 21745820
    [Abstract] [Full Text] [Related]

  • 2. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.
    Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.
    Genome Inform; 2006 Oct; 17(1):88-99. PubMed ID: 17503359
    [Abstract] [Full Text] [Related]

  • 3. Expression microarray analysis reveals alternative splicing of LAMA3 and DST genes in head and neck squamous cell carcinoma.
    Li R, Ochs MF, Ahn SM, Hennessey P, Tan M, Soudry E, Gaykalova DA, Uemura M, Brait M, Shao C, Westra W, Bishop J, Fertig EJ, Califano JA.
    PLoS One; 2014 Oct; 9(3):e91263. PubMed ID: 24675808
    [Abstract] [Full Text] [Related]

  • 4. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
    Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.
    BMC Genomics; 2006 Dec 27; 7():325. PubMed ID: 17192196
    [Abstract] [Full Text] [Related]

  • 5. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.
    BMC Genomics; 2008 Nov 07; 9():529. PubMed ID: 18990248
    [Abstract] [Full Text] [Related]

  • 6. Exon array analysis of head and neck cancers identifies a hypoxia related splice variant of LAMA3 associated with a poor prognosis.
    Moller-Levet CS, Betts GN, Harris AL, Homer JJ, West CM, Miller CJ.
    PLoS Comput Biol; 2009 Nov 07; 5(11):e1000571. PubMed ID: 19936049
    [Abstract] [Full Text] [Related]

  • 7. puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis.
    Liu X, Gao Z, Zhang L, Rattray M.
    BMC Bioinformatics; 2013 Feb 05; 14():39. PubMed ID: 23379655
    [Abstract] [Full Text] [Related]

  • 8. MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays.
    Turro E, Lewin A, Rose A, Dallman MJ, Richardson S.
    Nucleic Acids Res; 2010 Jan 05; 38(1):e4. PubMed ID: 19854940
    [Abstract] [Full Text] [Related]

  • 9. Exon array analysis using re-defined probe sets results in reliable identification of alternatively spliced genes in non-small cell lung cancer.
    Langer W, Sohler F, Leder G, Beckmann G, Seidel H, Gröne J, Hummel M, Sommer A.
    BMC Genomics; 2010 Nov 30; 11():676. PubMed ID: 21118496
    [Abstract] [Full Text] [Related]

  • 10. A robust estimation of exon expression to identify alternative spliced genes applied to human tissues and cancer samples.
    Risueño A, Roson-Burgo B, Dolnik A, Hernandez-Rivas JM, Bullinger L, De Las Rivas J.
    BMC Genomics; 2014 Oct 08; 15(1):879. PubMed ID: 25297679
    [Abstract] [Full Text] [Related]

  • 11. A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.
    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.
    Theor Biol Med Model; 2006 Apr 07; 3():19. PubMed ID: 16603076
    [Abstract] [Full Text] [Related]

  • 12. Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.
    Ha KCh, Coulombe-Huntington J, Majewski J.
    BMC Genomics; 2009 Nov 12; 10():519. PubMed ID: 19909511
    [Abstract] [Full Text] [Related]

  • 13. REMAS: a new regression model to identify alternative splicing events from exon array data.
    Zheng H, Hang X, Zhu J, Qian M, Qu W, Zhang C, Deng M.
    BMC Bioinformatics; 2009 Jan 30; 10 Suppl 1(Suppl 1):S18. PubMed ID: 19208117
    [Abstract] [Full Text] [Related]

  • 14. Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays.
    Kechris K, Yang YH, Yeh RF.
    BMC Genomics; 2008 Nov 20; 9():551. PubMed ID: 19021909
    [Abstract] [Full Text] [Related]

  • 15. Analysis of isoform expression from splicing array using multiple comparisons.
    Nair TM.
    Methods Mol Biol; 2012 Nov 20; 802():113-21. PubMed ID: 22130877
    [Abstract] [Full Text] [Related]

  • 16. Discovery of tissue-specific exons using comprehensive human exon microarrays.
    Clark TA, Schweitzer AC, Chen TX, Staples MK, Lu G, Wang H, Williams A, Blume JE.
    Genome Biol; 2007 Nov 20; 8(4):R64. PubMed ID: 17456239
    [Abstract] [Full Text] [Related]

  • 17. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.
    Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD.
    Science; 2003 Dec 19; 302(5653):2141-4. PubMed ID: 14684825
    [Abstract] [Full Text] [Related]

  • 18. Exon-based clustering of murine breast tumor transcriptomes reveals alternative exons whose expression is associated with metastasis.
    Dutertre M, Lacroix-Triki M, Driouch K, de la Grange P, Gratadou L, Beck S, Millevoi S, Tazi J, Lidereau R, Vagner S, Auboeuf D.
    Cancer Res; 2010 Feb 01; 70(3):896-905. PubMed ID: 20103641
    [Abstract] [Full Text] [Related]

  • 19. ExonMiner: Web service for analysis of GeneChip Exon array data.
    Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S.
    BMC Bioinformatics; 2008 Nov 26; 9():494. PubMed ID: 19036125
    [Abstract] [Full Text] [Related]

  • 20. A random effects model for the identification of differential splicing (REIDS) using exon and HTA arrays.
    Van Moerbeke M, Kasim A, Talloen W, Reumers J, Göhlmann HWH, Shkedy Z.
    BMC Bioinformatics; 2017 May 25; 18(1):273. PubMed ID: 28545391
    [Abstract] [Full Text] [Related]

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