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Journal Abstract Search

101 related items for PubMed ID: 21780002

  • 1. In silico prediction of transcriptional factor-binding sites.
    Oshchepkov DY, Levitsky VG.
    Methods Mol Biol; 2011; 760():251-67. PubMed ID: 21780002
    [Abstract] [Full Text] [Related]

  • 2. Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.
    Kolchanov NA, Merkulova TI, Ignatieva EV, Ananko EA, Oshchepkov DY, Levitsky VG, Vasiliev GV, Klimova NV, Merkulov VM, Charles Hodgman T.
    Brief Bioinform; 2007 Jul; 8(4):266-74. PubMed ID: 17627963
    [Abstract] [Full Text] [Related]

  • 3. The Motif Tool Assessment Platform (MTAP) for sequence-based transcription factor binding site prediction tools.
    Quest D, Ali H.
    Methods Mol Biol; 2010 Jul; 674():121-41. PubMed ID: 20827589
    [Abstract] [Full Text] [Related]

  • 4. Computational analysis and modeling of genome-scale avidity distribution of transcription factor binding sites in chip-pet experiments.
    Kuznetsov VA, Orlov YL, Wei CL, Ruan Y.
    Genome Inform; 2007 Jul; 19():83-94. PubMed ID: 18546507
    [Abstract] [Full Text] [Related]

  • 5. ZIFIBI: Prediction of DNA binding sites for zinc finger proteins.
    Cho SY, Chung M, Park M, Park S, Lee YS.
    Biochem Biophys Res Commun; 2008 May 09; 369(3):845-8. PubMed ID: 18325330
    [Abstract] [Full Text] [Related]

  • 6. Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors.
    Kel AE, Kel-Margoulis OV, Farnham PJ, Bartley SM, Wingender E, Zhang MQ.
    J Mol Biol; 2001 May 25; 309(1):99-120. PubMed ID: 11491305
    [Abstract] [Full Text] [Related]

  • 7. Computational approaches to finding and analyzing cis-regulatory elements.
    Brown CT.
    Methods Cell Biol; 2008 May 25; 87():337-65. PubMed ID: 18485306
    [Abstract] [Full Text] [Related]

  • 8. POXO: a web-enabled tool series to discover transcription factor binding sites.
    Kankainen M, Pehkonen P, Rosenstöm P, Törönen P, Wong G, Holm L.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W534-40. PubMed ID: 16845065
    [Abstract] [Full Text] [Related]

  • 9. Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA.
    Roulet E, Fisch I, Junier T, Bucher P, Mermod N.
    In Silico Biol; 1998 Jul 01; 1(1):21-8. PubMed ID: 11471239
    [No Abstract] [Full Text] [Related]

  • 10. Transcription factor binding sites detection by using alignment-based approach.
    Mahdevar G, Sadeghi M, Nowzari-Dalini A.
    J Theor Biol; 2012 Jul 07; 304():96-102. PubMed ID: 22504445
    [Abstract] [Full Text] [Related]

  • 11. Efficient online transcription factor binding site adjustment by integrating transitive graph projection with MoRAine 2.0.
    Wittkop T, Rahmann S, Baumbach J.
    J Integr Bioinform; 2010 Mar 25; 7(3):. PubMed ID: 20375458
    [Abstract] [Full Text] [Related]

  • 12. Regulatory motif finding by logic regression.
    Keles S, van der Laan MJ, Vulpe C.
    Bioinformatics; 2004 Nov 01; 20(16):2799-811. PubMed ID: 15166027
    [Abstract] [Full Text] [Related]

  • 13. Prediction of regulatory elements.
    Sandelin A.
    Methods Mol Biol; 2008 Nov 01; 453():233-44. PubMed ID: 18712306
    [Abstract] [Full Text] [Related]

  • 14. CONREAL web server: identification and visualization of conserved transcription factor binding sites.
    Berezikov E, Guryev V, Cuppen E.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W447-50. PubMed ID: 15980509
    [Abstract] [Full Text] [Related]

  • 15. Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae.
    Morris RT, O'Connor TR, Wyrick JJ.
    Bioinformatics; 2010 Jan 15; 26(2):168-74. PubMed ID: 19959498
    [Abstract] [Full Text] [Related]

  • 16. Bioinformatical and experimental approaches to investigation of transcription factor binding sites in vertebrate genes.
    Merkulova TI, Oshchepkov DY, Ignatieva EV, Ananko EA, Levitsky VG, Vasiliev GV, Klimova NV, Merkulov VM, Kolchanov NA.
    Biochemistry (Mosc); 2007 Nov 15; 72(11):1187-93. PubMed ID: 18205600
    [Abstract] [Full Text] [Related]

  • 17. [Advances on bioinformatic research in transcription factor binding sites].
    Hou L, Qian MP, Zhu YP, Deng MH.
    Yi Chuan; 2009 Apr 15; 31(4):365-73. PubMed ID: 19586888
    [Abstract] [Full Text] [Related]

  • 18. Probabilistic approaches to transcription factor binding site prediction.
    Posch S, Grau J, Gohr A, Keilwagen J, Grosse I.
    Methods Mol Biol; 2010 Apr 15; 674():97-119. PubMed ID: 20827588
    [Abstract] [Full Text] [Related]

  • 19. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
    Kim SY, Kim Y.
    BMC Bioinformatics; 2006 Jul 04; 7():330. PubMed ID: 16817975
    [Abstract] [Full Text] [Related]

  • 20. Structure-based ab initio prediction of transcription factor-binding sites.
    Liu LA, Bader JS.
    Methods Mol Biol; 2009 Jul 04; 541():23-41. PubMed ID: 19381536
    [Abstract] [Full Text] [Related]

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