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228 related items for PubMed ID: 21782828

  • 1. Conformation effects of base modification on the anticodon stem-loop of Bacillus subtilis tRNA(Tyr).
    Denmon AP, Wang J, Nikonowicz EP.
    J Mol Biol; 2011 Sep 16; 412(2):285-303. PubMed ID: 21782828
    [Abstract] [Full Text] [Related]

  • 2. Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
    Cabello-Villegas J, Winkler ME, Nikonowicz EP.
    J Mol Biol; 2002 Jun 21; 319(5):1015-34. PubMed ID: 12079344
    [Abstract] [Full Text] [Related]

  • 3. Metal ion stabilization of the U-turn of the A37 N6-dimethylallyl-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Tworowska I, Nikonowicz EP.
    Biochemistry; 2004 Jan 13; 43(1):55-66. PubMed ID: 14705931
    [Abstract] [Full Text] [Related]

  • 4. The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).
    Durant PC, Davis DR.
    Nucleic Acids Symp Ser; 1997 Jan 13; (36):56-7. PubMed ID: 9478205
    [Abstract] [Full Text] [Related]

  • 5. Solution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA.
    Wang J, Nikonowicz EP.
    J Mol Biol; 2011 Apr 22; 408(1):99-117. PubMed ID: 21333656
    [Abstract] [Full Text] [Related]

  • 6. An RNA model system for investigation of pseudouridine stabilization of the codon-anticodon interaction in tRNALys, tRNAHis and tRNATyr.
    Davis DR, Veltri CA, Nielsen L.
    J Biomol Struct Dyn; 1998 Jun 22; 15(6):1121-32. PubMed ID: 9669557
    [Abstract] [Full Text] [Related]

  • 7. Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Nikonowicz EP.
    Nucleic Acids Res; 2005 Jun 22; 33(22):6961-71. PubMed ID: 16377777
    [Abstract] [Full Text] [Related]

  • 8. Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
    Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13396-404. PubMed ID: 11063577
    [Abstract] [Full Text] [Related]

  • 9. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 10. Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
    Durant PC, Davis DR.
    J Mol Biol; 1999 Jan 08; 285(1):115-31. PubMed ID: 9878393
    [Abstract] [Full Text] [Related]

  • 11. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.
    Vendeix FA, Murphy FV, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.
    J Mol Biol; 2012 Mar 02; 416(4):467-85. PubMed ID: 22227389
    [Abstract] [Full Text] [Related]

  • 12. Escherichia coli dimethylallyl diphosphate:tRNA dimethylallyltransferase: essential elements for recognition of tRNA substrates within the anticodon stem-loop.
    Soderberg T, Poulter CD.
    Biochemistry; 2000 May 30; 39(21):6546-53. PubMed ID: 10828971
    [Abstract] [Full Text] [Related]

  • 13. Sequence and structure requirements for the biosynthesis of pseudouridine (psi 35) in plant pre-tRNA(Tyr).
    Szweykowska-Kulinska Z, Beier H.
    EMBO J; 1992 May 30; 11(5):1907-12. PubMed ID: 1582418
    [Abstract] [Full Text] [Related]

  • 14. Pseudouridine in the anticodon G psi A of plant cytoplasmic tRNA(Tyr) is required for UAG and UAA suppression in the TMV-specific context.
    Zerfass K, Beier H.
    Nucleic Acids Res; 1992 Nov 25; 20(22):5911-8. PubMed ID: 1461724
    [Abstract] [Full Text] [Related]

  • 15. Pseudouridylation of U(35) in the anticodon of Arabidopsis thaliana pre-tRNA(Tyr) depends on length rather than structure of an intron.
    Pieńkowska J, Michałowski D, Krzyzosiak WJ, Szweykowska-Kulińska Z.
    Biochim Biophys Acta; 2002 Mar 19; 1574(2):137-44. PubMed ID: 11955622
    [Abstract] [Full Text] [Related]

  • 16. Solution nuclear magnetic resonance analyses of the anticodon arms of proteinogenic and nonproteinogenic tRNA(Gly).
    Chang AT, Nikonowicz EP.
    Biochemistry; 2012 May 01; 51(17):3662-74. PubMed ID: 22468768
    [Abstract] [Full Text] [Related]

  • 17. Ribosome binding of DNA analogs of tRNA requires base modifications and supports the "extended anticodon".
    Dao V, Guenther R, Malkiewicz A, Nawrot B, Sochacka E, Kraszewski A, Jankowska J, Everett K, Agris PF.
    Proc Natl Acad Sci U S A; 1994 Mar 15; 91(6):2125-9. PubMed ID: 7510886
    [Abstract] [Full Text] [Related]

  • 18. Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe).
    Stuart JW, Koshlap KM, Guenther R, Agris PF.
    J Mol Biol; 2003 Dec 12; 334(5):901-18. PubMed ID: 14643656
    [Abstract] [Full Text] [Related]

  • 19. Posttranscriptional modifications at the 37th position in the anticodon stem-loop of tRNA: structural insights from MD simulations.
    Seelam Prabhakar P, Takyi NA, Wetmore SD.
    RNA; 2021 Feb 12; 27(2):202-220. PubMed ID: 33214333
    [Abstract] [Full Text] [Related]

  • 20. NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA.
    Wang J, Henkin TM, Nikonowicz EP.
    Nucleic Acids Res; 2010 Jun 12; 38(10):3388-98. PubMed ID: 20110252
    [Abstract] [Full Text] [Related]

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