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PUBMED FOR HANDHELDS

Journal Abstract Search


236 related items for PubMed ID: 21837636

  • 21. High quality binding modes in docking ligands to proteins.
    Gorelik B, Goldblum A.
    Proteins; 2008 May 15; 71(3):1373-86. PubMed ID: 18058908
    [Abstract] [Full Text] [Related]

  • 22. FIPSDock: a new molecular docking technique driven by fully informed swarm optimization algorithm.
    Liu Y, Zhao L, Li W, Zhao D, Song M, Yang Y.
    J Comput Chem; 2013 Jan 05; 34(1):67-75. PubMed ID: 22961860
    [Abstract] [Full Text] [Related]

  • 23. Blind docking method combining search of low-resolution binding sites with ligand pose refinement by molecular dynamics-based global optimization.
    Vorobjev YN.
    J Comput Chem; 2010 Apr 15; 31(5):1080-92. PubMed ID: 19821514
    [Abstract] [Full Text] [Related]

  • 24.
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  • 25. A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes.
    Zhang C, Liu S, Zhu Q, Zhou Y.
    J Med Chem; 2005 Apr 07; 48(7):2325-35. PubMed ID: 15801826
    [Abstract] [Full Text] [Related]

  • 26. RosettaLigand docking with full ligand and receptor flexibility.
    Davis IW, Baker D.
    J Mol Biol; 2009 Jan 16; 385(2):381-92. PubMed ID: 19041878
    [Abstract] [Full Text] [Related]

  • 27. Protein-ligand docking using mutually orthogonal Latin squares (MOLSDOCK).
    Viji SN, Prasad PA, Gautham N.
    J Chem Inf Model; 2009 Dec 16; 49(12):2687-94. PubMed ID: 19968302
    [Abstract] [Full Text] [Related]

  • 28. Flexible protein-flexible ligand docking with disrupted velocity simulated annealing.
    Huang Z, Wong CF, Wheeler RA.
    Proteins; 2008 Apr 16; 71(1):440-54. PubMed ID: 17957770
    [Abstract] [Full Text] [Related]

  • 29. Empirical scoring functions for advanced protein-ligand docking with PLANTS.
    Korb O, Stützle T, Exner TE.
    J Chem Inf Model; 2009 Jan 16; 49(1):84-96. PubMed ID: 19125657
    [Abstract] [Full Text] [Related]

  • 30. Evaluation of the performance of four molecular docking programs on a diverse set of protein-ligand complexes.
    Li X, Li Y, Cheng T, Liu Z, Wang R.
    J Comput Chem; 2010 Aug 16; 31(11):2109-25. PubMed ID: 20127741
    [Abstract] [Full Text] [Related]

  • 31. GalaxyDock2: protein-ligand docking using beta-complex and global optimization.
    Shin WH, Kim JK, Kim DS, Seok C.
    J Comput Chem; 2013 Nov 15; 34(30):2647-56. PubMed ID: 24108416
    [Abstract] [Full Text] [Related]

  • 32. New and fast statistical-thermodynamic method for computation of protein-ligand binding entropy substantially improves docking accuracy.
    Ruvinsky AM, Kozintsev AV.
    J Comput Chem; 2005 Aug 15; 26(11):1089-95. PubMed ID: 15929088
    [Abstract] [Full Text] [Related]

  • 33. SDOCK: a global protein-protein docking program using stepwise force-field potentials.
    Zhang C, Lai L.
    J Comput Chem; 2011 Sep 15; 32(12):2598-612. PubMed ID: 21618559
    [Abstract] [Full Text] [Related]

  • 34. Comparative assessment of scoring functions on a diverse test set.
    Cheng T, Li X, Li Y, Liu Z, Wang R.
    J Chem Inf Model; 2009 Apr 15; 49(4):1079-93. PubMed ID: 19358517
    [Abstract] [Full Text] [Related]

  • 35. Supervised consensus scoring for docking and virtual screening.
    Teramoto R, Fukunishi H.
    J Chem Inf Model; 2007 Apr 15; 47(2):526-34. PubMed ID: 17295466
    [Abstract] [Full Text] [Related]

  • 36. Complex-type-dependent scoring functions in protein-protein docking.
    Li CH, Ma XH, Shen LZ, Chang S, Chen WZ, Wang CX.
    Biophys Chem; 2007 Aug 15; 129(1):1-10. PubMed ID: 17540496
    [Abstract] [Full Text] [Related]

  • 37. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD, Jewsbury PJ, Essex JW.
    J Comput Chem; 2003 Oct 15; 24(13):1637-56. PubMed ID: 12926007
    [Abstract] [Full Text] [Related]

  • 38. MolDock: a new technique for high-accuracy molecular docking.
    Thomsen R, Christensen MH.
    J Med Chem; 2006 Jun 01; 49(11):3315-21. PubMed ID: 16722650
    [Abstract] [Full Text] [Related]

  • 39. DrugScore(CSD)-knowledge-based scoring function derived from small molecule crystal data with superior recognition rate of near-native ligand poses and better affinity prediction.
    Velec HF, Gohlke H, Klebe G.
    J Med Chem; 2005 Oct 06; 48(20):6296-303. PubMed ID: 16190756
    [Abstract] [Full Text] [Related]

  • 40. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY, Zou X.
    Proteins; 2007 Feb 01; 66(2):399-421. PubMed ID: 17096427
    [Abstract] [Full Text] [Related]


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