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Journal Abstract Search

259 related items for PubMed ID: 21876205

  • 1. A face in the crowd: recognizing peptides through database search.
    Eng JK, Searle BC, Clauser KR, Tabb DL.
    Mol Cell Proteomics; 2011 Nov; 10(11):R111.009522. PubMed ID: 21876205
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  • 3. Protein identification from tandem mass spectra by database searching.
    Edwards NJ.
    Methods Mol Biol; 2011 Nov; 694():119-38. PubMed ID: 21082432
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  • 7. MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics.
    Kong AT, Leprevost FV, Avtonomov DM, Mellacheruvu D, Nesvizhskii AI.
    Nat Methods; 2017 May; 14(5):513-520. PubMed ID: 28394336
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  • 8. High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.
    Madsen JA, Xu H, Robinson MR, Horton AP, Shaw JB, Giles DK, Kaoud TS, Dalby KN, Trent MS, Brodbelt JS.
    Mol Cell Proteomics; 2013 Sep; 12(9):2604-14. PubMed ID: 23695934
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  • 12. PTMeta: increasing identification rates of modified peptides using modification prescanning and meta-analysis.
    Nahnsen S, Sachsenberg T, Kohlbacher O.
    Proteomics; 2013 Mar; 13(6):1042-51. PubMed ID: 23335442
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  • 13. Comet: an open-source MS/MS sequence database search tool.
    Eng JK, Jahan TA, Hoopmann MR.
    Proteomics; 2013 Jan; 13(1):22-4. PubMed ID: 23148064
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  • 14. Effective Leveraging of Targeted Search Spaces for Improving Peptide Identification in Tandem Mass Spectrometry Based Proteomics.
    Shanmugam AK, Nesvizhskii AI.
    J Proteome Res; 2015 Dec 04; 14(12):5169-78. PubMed ID: 26569054
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  • 15. Database Search Engines: Paradigms, Challenges and Solutions.
    Verheggen K, Martens L, Berven FS, Barsnes H, Vaudel M.
    Adv Exp Med Biol; 2016 Dec 04; 919():147-156. PubMed ID: 27975215
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  • 16. Interpretation of collision-induced fragmentation tandem mass spectra of posttranslationally modified peptides.
    Bunkenborg J, Matthiesen R.
    Methods Mol Biol; 2007 Dec 04; 367():169-94. PubMed ID: 17185776
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  • 17. Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics.
    Muth T, Rapp E, Berven FS, Barsnes H, Vaudel M.
    Adv Exp Med Biol; 2016 Dec 04; 919():217-226. PubMed ID: 27975219
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  • 18. PeaksPTM: Mass spectrometry-based identification of peptides with unspecified modifications.
    Han X, He L, Xin L, Shan B, Ma B.
    J Proteome Res; 2011 Jul 01; 10(7):2930-6. PubMed ID: 21609001
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  • 19. Crescendo: A Protein Sequence Database Search Engine for Tandem Mass Spectra.
    Wang J, Zhang Y, Yu Y.
    J Am Soc Mass Spectrom; 2015 Jul 01; 26(7):1077-84. PubMed ID: 25895889
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  • 20. Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing.
    Li Y, Chi H, Wang LH, Wang HP, Fu Y, Yuan ZF, Li SJ, Liu YS, Sun RX, Zeng R, He SM.
    Rapid Commun Mass Spectrom; 2010 Mar 01; 24(6):807-14. PubMed ID: 20187083
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