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Journal Abstract Search

197 related items for PubMed ID: 21916413

  • 1. Ultrafast fluorescence decay profiles reveal differential unstacking of 2-aminopurine from neighboring bases in single-stranded DNA-binding protein subsites.
    Nguyen HN, Zhao L, Gray CW, Gray DM, Xia T.
    Biochemistry; 2011 Oct 25; 50(42):8989-9001. PubMed ID: 21916413
    [Abstract] [Full Text] [Related]

  • 2. Nucleotides sequestered at different subsite loci within DNA-binding pockets of two OB-fold single-stranded DNA-binding proteins are unstacked to different extents.
    Nguyen HN, Zhao L, Gray CW, Gray DM, Xia T.
    Biopolymers; 2013 Jul 25; 99(7):484-96. PubMed ID: 23616216
    [Abstract] [Full Text] [Related]

  • 3. CD of single-stranded, double-stranded, and G-quartet nucleic acids in complexes with a single-stranded DNA-binding protein.
    Gray DM, Gray CW, Mou TC, Wen JD.
    Enantiomer; 2002 Jul 25; 7(2-3):49-58. PubMed ID: 12108634
    [Abstract] [Full Text] [Related]

  • 4. Effects of ssDNA sequences on non-sequence-specific protein binding.
    Mou TC, Shen M, Abdalla S, Delamora D, Bochkareva E, Bochkarev A, Gray DM.
    Chirality; 2006 May 15; 18(5):370-82. PubMed ID: 16575881
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  • 5. Ff gene 5 single-stranded DNA-binding protein assembles on nucleotides constrained by a DNA hairpin.
    Wen JD, Gray DM.
    Biochemistry; 2004 Mar 09; 43(9):2622-34. PubMed ID: 14992600
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  • 6. Circular dichroism and electron microscopy of a core Y61F mutant of the F1 gene 5 single-stranded DNA-binding protein and theoretical analysis of CD spectra of four Tyr --> Phe substitutions.
    Thompson TM, Mark BL, Gray CW, Terwilliger TC, Sreerama N, Woody RW, Gray DM.
    Biochemistry; 1998 May 19; 37(20):7463-77. PubMed ID: 9585560
    [Abstract] [Full Text] [Related]

  • 7. Exonuclease-polymerase active site partitioning of primer-template DNA strands and equilibrium Mg2+ binding properties of bacteriophage T4 DNA polymerase.
    Beechem JM, Otto MR, Bloom LB, Eritja R, Reha-Krantz LJ, Goodman MF.
    Biochemistry; 1998 Jul 14; 37(28):10144-55. PubMed ID: 9665720
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  • 8. Tyrosine mutant helps define overlapping CD bands from fd gene 5 protein.nucleic acid complexes.
    Mark BL, Gray DM.
    Biopolymers; 1997 Sep 14; 42(3):337-48. PubMed ID: 9279126
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  • 12. Structure and dynamics in DNA looped domains: CAG triplet repeat sequence dynamics probed by 2-aminopurine fluorescence.
    Lee BJ, Barch M, Castner EW, Völker J, Breslauer KJ.
    Biochemistry; 2007 Sep 25; 46(38):10756-66. PubMed ID: 17718541
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  • 13. Stopped-flow fluorescence study of precatalytic primer strand base-unstacking transitions in the exonuclease cleft of bacteriophage T4 DNA polymerase.
    Otto MR, Bloom LB, Goodman MF, Beechem JM.
    Biochemistry; 1998 Jul 14; 37(28):10156-63. PubMed ID: 9665721
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  • 16. Stacking-unstacking dynamics of oligodeoxynucleotide trimers.
    Jean JM, Hall KB.
    Biochemistry; 2004 Aug 10; 43(31):10277-84. PubMed ID: 15287755
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  • 17. Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 monomer binding.
    Jose D, Weitzel SE, Baase WA, von Hippel PH.
    Nucleic Acids Res; 2015 Oct 30; 43(19):9276-90. PubMed ID: 26275775
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  • 18. Conformation and dynamics of abasic sites in DNA investigated by time-resolved fluorescence of 2-aminopurine.
    Rachofsky EL, Seibert E, Stivers JT, Osman R, Ross JB.
    Biochemistry; 2001 Jan 30; 40(4):957-67. PubMed ID: 11170417
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  • 20. Site-specific dynamics of strands in ss- and dsDNA as revealed by time-domain fluorescence of 2-aminopurine.
    Ramreddy T, Rao BJ, Krishnamoorthy G.
    J Phys Chem B; 2007 May 24; 111(20):5757-66. PubMed ID: 17469866
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