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Journal Abstract Search

2287 related items for PubMed ID: 21919503

  • 21. Three-dimensional structure of the complex between acyl-coenzyme A binding protein and palmitoyl-coenzyme A.
    Kragelund BB, Andersen KV, Madsen JC, Knudsen J, Poulsen FM.
    J Mol Biol; 1993 Apr 20; 230(4):1260-77. PubMed ID: 8503960
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  • 22. CREDO: a protein-ligand interaction database for drug discovery.
    Schreyer A, Blundell T.
    Chem Biol Drug Des; 2009 Feb 20; 73(2):157-67. PubMed ID: 19207418
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  • 23. Structural parameterization of the binding enthalpy of small ligands.
    Luque I, Freire E.
    Proteins; 2002 Nov 01; 49(2):181-90. PubMed ID: 12210999
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  • 24. A hybrid clustering of protein binding sites.
    Iván G, Szabadka Z, Grolmusz V.
    FEBS J; 2010 Mar 01; 277(6):1494-502. PubMed ID: 20148971
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  • 25. Molecular fields in ligand discovery.
    Gane PJ, Chan AW.
    Methods Mol Biol; 2013 Mar 01; 1008():479-99. PubMed ID: 23729264
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  • 26. N-H...O, O-H...O, and C-H...O hydrogen bonds in protein-ligand complexes: strong and weak interactions in molecular recognition.
    Sarkhel S, Desiraju GR.
    Proteins; 2004 Feb 01; 54(2):247-59. PubMed ID: 14696187
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  • 27. The structure of glutamine-binding protein complexed with glutamine at 1.94 A resolution: comparisons with other amino acid binding proteins.
    Sun YJ, Rose J, Wang BC, Hsiao CD.
    J Mol Biol; 1998 Apr 24; 278(1):219-29. PubMed ID: 9571045
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  • 28. Computational approaches to identifying and characterizing protein binding sites for ligand design.
    Henrich S, Salo-Ahen OM, Huang B, Rippmann FF, Cruciani G, Wade RC.
    J Mol Recognit; 2010 Apr 24; 23(2):209-19. PubMed ID: 19746440
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  • 29. Structural interaction fingerprint (SIFt): a novel method for analyzing three-dimensional protein-ligand binding interactions.
    Deng Z, Chuaqui C, Singh J.
    J Med Chem; 2004 Jan 15; 47(2):337-44. PubMed ID: 14711306
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  • 30. Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures.
    Strömbergsson H, Kryshtafovych A, Prusis P, Fidelis K, Wikberg JE, Komorowski J, Hvidsten TR.
    Proteins; 2006 Nov 15; 65(3):568-79. PubMed ID: 16948162
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  • 31. Geometric and chemical patterns of interaction in protein--ligand complexes and their application in docking.
    Moreno E, León K.
    Proteins; 2002 Apr 01; 47(1):1-13. PubMed ID: 11870860
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  • 32. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R, Kurbatova N, Thornton J.
    Bioinformatics; 2008 Aug 15; 24(16):i105-11. PubMed ID: 18689810
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  • 33. NMR investigations of protein-carbohydrate interactions: studies on the relevance of Trp/Tyr variations in lectin binding sites as deduced from titration microcalorimetry and NMR studies on hevein domains. Determination of the NMR structure of the complex between pseudohevein and N,N',N"-triacetylchitotriose.
    Asensio JL, Siebert HC, von Der Lieth CW, Laynez J, Bruix M, Soedjanaamadja UM, Beintema JJ, Cañada FJ, Gabius HJ, Jiménez-Barbero J.
    Proteins; 2000 Aug 01; 40(2):218-36. PubMed ID: 10842338
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  • 34. The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria.
    Peters KP, Fauck J, Frömmel C.
    J Mol Biol; 1996 Feb 16; 256(1):201-13. PubMed ID: 8609611
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  • 35. Protein side-chain rearrangement in regions of point mutations.
    Eyal E, Najmanovich R, Edelman M, Sobolev V.
    Proteins; 2003 Feb 01; 50(2):272-82. PubMed ID: 12486721
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  • 36. Predicting the accuracy of ligand overlay methods with Random Forest models.
    Nandigam RK, Evans DA, Erickson JA, Kim S, Sutherland JJ.
    J Chem Inf Model; 2008 Dec 01; 48(12):2386-94. PubMed ID: 19053524
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  • 37. Analysis and optimization of structure-based virtual screening protocols (1): exploration of ligand conformational sampling techniques.
    Good AC, Cheney DL.
    J Mol Graph Model; 2003 Sep 01; 22(1):23-30. PubMed ID: 12798388
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  • 38. PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures.
    Shin JM, Cho DH.
    Nucleic Acids Res; 2005 Jan 01; 33(Database issue):D238-41. PubMed ID: 15608186
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  • 39. Similarity metrics for ligands reflecting the similarity of the target proteins.
    Schuffenhauer A, Floersheim P, Acklin P, Jacoby E.
    J Chem Inf Comput Sci; 2003 Jan 01; 43(2):391-405. PubMed ID: 12653501
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  • 40. Predicting druggable binding sites at the protein-protein interface.
    Fuller JC, Burgoyne NJ, Jackson RM.
    Drug Discov Today; 2009 Feb 01; 14(3-4):155-61. PubMed ID: 19041415
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