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Journal Abstract Search

124 related items for PubMed ID: 22060437

  • 1. Role of chain entropy in an analytic model of protein binding in single-DNA stretching experiments.
    Lam PM, Neumann RM.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Sep; 84(3 Pt 1):032901. PubMed ID: 22060437
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  • 2. Discrete persistent-chain model for protein binding on DNA.
    Lam PM, Zhen Y.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Apr; 83(4 Pt 1):041912. PubMed ID: 21599206
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  • 3. Bending affects entropy of semiflexible polymers: Application to protein-DNA complexes.
    Rappaport SM, Rabin Y.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Nov; 80(5 Pt 1):052801. PubMed ID: 20365029
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  • 4. Modeling DNA unzipping in the presence of bound proteins.
    Habib F, Bundschuh R.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Sep; 72(3 Pt 1):031906. PubMed ID: 16241481
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  • 5. Elastic energy of protein-DNA chimeras.
    Tseng CY, Wang A, Zocchi G, Rolih B, Levine AJ.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Dec; 80(6 Pt 1):061912. PubMed ID: 20365195
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  • 6. Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.
    Harris SA, Sands ZA, Laughton CA.
    Biophys J; 2005 Mar; 88(3):1684-91. PubMed ID: 15626714
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  • 8. Statistical-mechanical theory of DNA looping.
    Zhang Y, McEwen AE, Crothers DM, Levene SD.
    Biophys J; 2006 Mar 15; 90(6):1903-12. PubMed ID: 16361335
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  • 11. Thermal denaturation of fluctuating finite DNA chains: the role of bending rigidity in bubble nucleation.
    Palmeri J, Manghi M, Destainville N.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2008 Jan 15; 77(1 Pt 1):011913. PubMed ID: 18351882
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  • 12. Disruption of protein-mediated DNA looping by tension in the substrate DNA.
    Blumberg S, Tkachenko AV, Meiners JC.
    Biophys J; 2005 Mar 15; 88(3):1692-701. PubMed ID: 15653717
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  • 14. On the discrete Peyrard-Bishop model of DNA: stationary solutions and stability.
    Cuenda S, Sánchez A.
    Chaos; 2006 Jun 15; 16(2):023123. PubMed ID: 16822026
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  • 17. Geometry of mediating protein affects the probability of loop formation in DNA.
    Agrawal NJ, Radhakrishnan R, Purohit PK.
    Biophys J; 2008 Apr 15; 94(8):3150-8. PubMed ID: 18192346
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  • 20. Fast-scanning atomic force microscopy reveals the molecular mechanism of DNA cleavage by ApaI endonuclease.
    Yokokawa M, Yoshimura SH, Naito Y, Ando T, Yagi A, Sakai N, Takeyasu K.
    IEE Proc Nanobiotechnol; 2006 Aug 15; 153(4):60-6. PubMed ID: 16948489
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