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Journal Abstract Search

173 related items for PubMed ID: 2207289

  • 1. Conformational sampling using high-temperature molecular dynamics.
    Bruccoleri RE, Karplus M.
    Biopolymers; 1990 Dec; 29(14):1847-62. PubMed ID: 2207289
    [Abstract] [Full Text] [Related]

  • 2. Structural model of the anti-snake-toxin antibody, M alpha 2,3.
    Tenette C, Ducancel F, Smith JC.
    Proteins; 1996 Sep; 26(1):9-31. PubMed ID: 8880926
    [Abstract] [Full Text] [Related]

  • 3. Structure of antibody hypervariable loops reproduced by a conformational search algorithm.
    Bruccoleri RE, Haber E, Novotný J.
    Nature; 1988 Oct 06; 335(6190):564-8. PubMed ID: 3419534
    [Abstract] [Full Text] [Related]

  • 4. Conformational dynamics of cytochrome c: correlation to hydrogen exchange.
    García AE, Hummer G.
    Proteins; 1999 Aug 01; 36(2):175-91. PubMed ID: 10398365
    [Abstract] [Full Text] [Related]

  • 5. Structure and energy landscape of a photoswitchable peptide: a replica exchange molecular dynamics study.
    Nguyen PH, Mu Y, Stock G.
    Proteins; 2005 Aug 15; 60(3):485-94. PubMed ID: 15977160
    [Abstract] [Full Text] [Related]

  • 6. Variability of conformations at crystal contacts in BPTI represent true low-energy structures: correspondence among lattice packing and molecular dynamics structures.
    Kossiakoff AA, Randal M, Guenot J, Eigenbrot C.
    Proteins; 1992 Sep 15; 14(1):65-74. PubMed ID: 1384033
    [Abstract] [Full Text] [Related]

  • 7. Necessary conditions for avoiding incorrect polypeptide folds in conformational search by energy minimization.
    Vajda S, Jafri MS, Sezerman OU, DeLisi C.
    Biopolymers; 1993 Jan 15; 33(1):173-92. PubMed ID: 8427934
    [Abstract] [Full Text] [Related]

  • 8. Convergence of replica exchange molecular dynamics.
    Zhang W, Wu C, Duan Y.
    J Chem Phys; 2005 Oct 15; 123(15):154105. PubMed ID: 16252940
    [Abstract] [Full Text] [Related]

  • 9. Conformational sampling of CDR-H3 in antibodies by multicanonical molecular dynamics simulation.
    Shirai H, Nakajima N, Higo J, Kidera A, Nakamura H.
    J Mol Biol; 1998 May 01; 278(2):481-96. PubMed ID: 9571065
    [Abstract] [Full Text] [Related]

  • 10. Conformational analysis of endothelin-1: effects of solvation free energy.
    Hempel JC, Fine RM, Hassan M, Ghoul W, Guaragna A, Koerber SC, Li Z, Hagler AT.
    Biopolymers; 1995 Sep 01; 36(3):283-301. PubMed ID: 7669916
    [Abstract] [Full Text] [Related]

  • 11. Protein flexibility: multiple molecular dynamics simulations of insulin chain B.
    Legge FS, Budi A, Treutlein H, Yarovsky I.
    Biophys Chem; 2006 Jan 20; 119(2):146-57. PubMed ID: 16129550
    [Abstract] [Full Text] [Related]

  • 12. Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
    Song J, Laskowski M, Qasim MA, Markley JL.
    Biochemistry; 2003 Jun 03; 42(21):6380-91. PubMed ID: 12767219
    [Abstract] [Full Text] [Related]

  • 13. Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions.
    Olson MA, Feig M, Brooks CL.
    J Comput Chem; 2008 Apr 15; 29(5):820-31. PubMed ID: 17876760
    [Abstract] [Full Text] [Related]

  • 14. Conformational sampling by NMR solution structures calculated with the program DIANA evaluated by comparison with long-time molecular dynamics calculations in explicit water.
    Berndt KD, Güntert P, Wüthrich K.
    Proteins; 1996 Mar 15; 24(3):304-13. PubMed ID: 8778777
    [Abstract] [Full Text] [Related]

  • 15. Mass-weighted molecular dynamics simulation of cyclic polypeptides.
    Mao B, Maggiora GM, Chou KC.
    Biopolymers; 1991 Aug 15; 31(9):1077-86. PubMed ID: 1786339
    [Abstract] [Full Text] [Related]

  • 16. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S, Zacharias M.
    J Struct Biol; 2009 Jun 15; 166(3):288-94. PubMed ID: 19272454
    [Abstract] [Full Text] [Related]

  • 17. Molecular dynamics simulation of the docking of substrates to proteins.
    Di Nola A, Roccatano D, Berendsen HJ.
    Proteins; 1994 Jul 15; 19(3):174-82. PubMed ID: 7937732
    [Abstract] [Full Text] [Related]

  • 18. Conformations of the third hypervariable region in the VH domain of immunoglobulins.
    Morea V, Tramontano A, Rustici M, Chothia C, Lesk AM.
    J Mol Biol; 1998 Jan 16; 275(2):269-94. PubMed ID: 9466909
    [Abstract] [Full Text] [Related]

  • 19. Hybrid Monte Carlo with multidimensional replica exchanges: conformational equilibria of the hypervariable regions of a llama VHH antibody domain.
    Fenwick MK, Escobedo FA.
    Biopolymers; 2003 Feb 16; 68(2):160-77. PubMed ID: 12548621
    [Abstract] [Full Text] [Related]

  • 20. Thermodynamic origin of cis/trans isomers of a proline-containing beta-turn model dipeptide in aqueous solution: a combined variable temperature 1H-NMR, two-dimensional 1H,1H gradient enhanced nuclear Overhauser effect spectroscopy (NOESY), one-dimensional steady-state intermolecular 13C,1H NOE, and molecular dynamics study.
    Troganis A, Gerothanassis IP, Athanassiou Z, Mavromoustakos T, Hawkes GE, Sakarellos C.
    Biopolymers; 2000 Jan 16; 53(1):72-83. PubMed ID: 10644952
    [Abstract] [Full Text] [Related]

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