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Journal Abstract Search

100 related items for PubMed ID: 22084009

  • 1. Using binding profiles to predict binding sites of target RNAs.
    Poolsap U, Kato Y, Sato K, Akutsu T.
    J Bioinform Comput Biol; 2011 Dec; 9(6):697-713. PubMed ID: 22084009
    [Abstract] [Full Text] [Related]

  • 2. Dynamic programming algorithms for RNA structure prediction with binding sites.
    Poolsap U, Kato Y, Akutsu T.
    Pac Symp Biocomput; 2010 Dec; ():98-107. PubMed ID: 19908362
    [Abstract] [Full Text] [Related]

  • 3. RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming.
    Kato Y, Sato K, Hamada M, Watanabe Y, Asai K, Akutsu T.
    Bioinformatics; 2010 Sep 15; 26(18):i460-6. PubMed ID: 20823308
    [Abstract] [Full Text] [Related]

  • 4. A partition function algorithm for interacting nucleic acid strands.
    Chitsaz H, Salari R, Sahinalp SC, Backofen R.
    Bioinformatics; 2009 Jun 15; 25(12):i365-73. PubMed ID: 19478011
    [Abstract] [Full Text] [Related]

  • 5. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
    Hamada M, Sato K, Kiryu H, Mituyama T, Asai K.
    Bioinformatics; 2009 Dec 15; 25(24):3236-43. PubMed ID: 19808876
    [Abstract] [Full Text] [Related]

  • 6. Antisense RNA regulation of the par post-segregational killing system: structural analysis and mechanism of binding of the antisense RNA, RNAII and its target, RNAI.
    Greenfield TJ, Franch T, Gerdes K, Weaver KE.
    Mol Microbiol; 2001 Oct 15; 42(2):527-37. PubMed ID: 11703673
    [Abstract] [Full Text] [Related]

  • 7. Partition function and base pairing probabilities for RNA-RNA interaction prediction.
    Huang FW, Qin J, Reidys CM, Stadler PF.
    Bioinformatics; 2009 Oct 15; 25(20):2646-54. PubMed ID: 19671692
    [Abstract] [Full Text] [Related]

  • 8. RNA-RNA interaction prediction and antisense RNA target search.
    Alkan C, Karakoç E, Nadeau JH, Sahinalp SC, Zhang K.
    J Comput Biol; 2006 Mar 15; 13(2):267-82. PubMed ID: 16597239
    [Abstract] [Full Text] [Related]

  • 9. Predicting protein-binding regions in RNA using nucleotide profiles and compositions.
    Choi D, Park B, Chae H, Lee W, Han K.
    BMC Syst Biol; 2017 Mar 14; 11(Suppl 2):16. PubMed ID: 28361677
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  • 11. Computational Prediction of RNA-Protein Interactions.
    Mann CM, Muppirala UK, Dobbs D.
    Methods Mol Biol; 2017 Mar 14; 1543():169-185. PubMed ID: 28349426
    [Abstract] [Full Text] [Related]

  • 12. RBind: computational network method to predict RNA binding sites.
    Wang K, Jian Y, Wang H, Zeng C, Zhao Y.
    Bioinformatics; 2018 Sep 15; 34(18):3131-3136. PubMed ID: 29718097
    [Abstract] [Full Text] [Related]

  • 13. An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data.
    Kato Y, Mori T, Sato K, Maegawa S, Hosokawa H, Akutsu T.
    Bioinformatics; 2017 Jan 15; 33(2):202-209. PubMed ID: 27663495
    [Abstract] [Full Text] [Related]

  • 14. Prediction of protein-RNA binding sites by a random forest method with combined features.
    Liu ZP, Wu LY, Wang Y, Zhang XS, Chen L.
    Bioinformatics; 2010 Jul 01; 26(13):1616-22. PubMed ID: 20483814
    [Abstract] [Full Text] [Related]

  • 15. Optimization of a novel biophysical model using large scale in vivo antisense hybridization data displays improved prediction capabilities of structurally accessible RNA regions.
    Vazquez-Anderson J, Mihailovic MK, Baldridge KC, Reyes KG, Haning K, Cho SH, Amador P, Powell WB, Contreras LM.
    Nucleic Acids Res; 2017 May 19; 45(9):5523-5538. PubMed ID: 28334800
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