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382 related items for PubMed ID: 22168237
1. MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts. Deng X, Cheng J. BMC Bioinformatics; 2011 Dec 14; 12():472. PubMed ID: 22168237 [Abstract] [Full Text] [Related]
2. MSACompro: improving multiple protein sequence alignment by predicted structural features. Deng X, Cheng J. Methods Mol Biol; 2014 Dec 14; 1079():273-83. PubMed ID: 24170409 [Abstract] [Full Text] [Related]
3. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities. Liu Y, Schmidt B, Maskell DL. Bioinformatics; 2010 Aug 15; 26(16):1958-64. PubMed ID: 20576627 [Abstract] [Full Text] [Related]
4. MSAIndelFR: a scheme for multiple protein sequence alignment using information on indel flanking regions. Al-Shatnawi M, Ahmad MO, Swamy MN. BMC Bioinformatics; 2015 Nov 23; 16():393. PubMed ID: 26597571 [Abstract] [Full Text] [Related]
5. PROMALS web server for accurate multiple protein sequence alignments. Pei J, Kim BH, Tang M, Grishin NV. Nucleic Acids Res; 2007 Jul 23; 35(Web Server issue):W649-52. PubMed ID: 17452345 [Abstract] [Full Text] [Related]
6. PROMALS: towards accurate multiple sequence alignments of distantly related proteins. Pei J, Grishin NV. Bioinformatics; 2007 Apr 01; 23(7):802-8. PubMed ID: 17267437 [Abstract] [Full Text] [Related]
7. Probalign: multiple sequence alignment using partition function posterior probabilities. Roshan U, Livesay DR. Bioinformatics; 2006 Nov 15; 22(22):2715-21. PubMed ID: 16954142 [Abstract] [Full Text] [Related]
8. Protein multiple sequence alignment benchmarking through secondary structure prediction. Le Q, Sievers F, Higgins DG. Bioinformatics; 2017 May 01; 33(9):1331-1337. PubMed ID: 28093407 [Abstract] [Full Text] [Related]
11. A Novel Approach to Multiple Sequence Alignment Using Multiobjective Evolutionary Algorithm Based on Decomposition. Zhu H, He Z, Jia Y. IEEE J Biomed Health Inform; 2016 Mar 01; 20(2):717-27. PubMed ID: 25700475 [Abstract] [Full Text] [Related]
16. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy. Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ. BMC Bioinformatics; 2003 Oct 10; 4():47. PubMed ID: 14552658 [Abstract] [Full Text] [Related]
17. The MULTICOM Protein Structure Prediction Server Empowered by Deep Learning and Contact Distance Prediction. Hou J, Wu T, Guo Z, Quadir F, Cheng J. Methods Mol Biol; 2020 Oct 10; 2165():13-26. PubMed ID: 32621217 [Abstract] [Full Text] [Related]
18. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost. Yamada S, Gotoh O, Yamana H. BMC Bioinformatics; 2006 Dec 01; 7():524. PubMed ID: 17137519 [Abstract] [Full Text] [Related]
19. Quality measures for protein alignment benchmarks. Edgar RC. Nucleic Acids Res; 2010 Apr 01; 38(7):2145-53. PubMed ID: 20047958 [Abstract] [Full Text] [Related]
20. A knowledge-based multiple-sequence alignment algorithm. Nguyen KD, Pan Y. IEEE/ACM Trans Comput Biol Bioinform; 2013 Apr 01; 10(4):884-96. PubMed ID: 24334383 [Abstract] [Full Text] [Related] Page: [Next] [New Search]