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Journal Abstract Search

195 related items for PubMed ID: 22275112

  • 1. Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement.
    Tuncbag N, Keskin O, Nussinov R, Gursoy A.
    Proteins; 2012 Apr; 80(4):1239-49. PubMed ID: 22275112
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  • 2. Structural modeling of protein complexes: Current capabilities and challenges.
    Dapkūnas J, Olechnovič K, Venclovas Č.
    Proteins; 2019 Dec; 87(12):1222-1232. PubMed ID: 31294859
    [Abstract] [Full Text] [Related]

  • 3. Global and local structural similarity in protein-protein complexes: implications for template-based docking.
    Kundrotas PJ, Vakser IA.
    Proteins; 2013 Dec; 81(12):2137-42. PubMed ID: 23946125
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  • 4. Docking by structural similarity at protein-protein interfaces.
    Sinha R, Kundrotas PJ, Vakser IA.
    Proteins; 2010 Nov 15; 78(15):3235-41. PubMed ID: 20715056
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  • 5. PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.
    Baspinar A, Cukuroglu E, Nussinov R, Keskin O, Gursoy A.
    Nucleic Acids Res; 2014 Jul 15; 42(Web Server issue):W285-9. PubMed ID: 24829450
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  • 8. Accuracy of protein-protein binding sites in high-throughput template-based modeling.
    Kundrotas PJ, Vakser IA.
    PLoS Comput Biol; 2010 Apr 01; 6(4):e1000727. PubMed ID: 20369011
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  • 9. Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI.
    Schindler CE, Chauvot de Beauchêne I, de Vries SJ, Zacharias M.
    Proteins; 2017 Mar 01; 85(3):391-398. PubMed ID: 27785830
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  • 12. iATTRACT: simultaneous global and local interface optimization for protein-protein docking refinement.
    Schindler CE, de Vries SJ, Zacharias M.
    Proteins; 2015 Feb 01; 83(2):248-58. PubMed ID: 25402278
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  • 14. How to choose templates for modeling of protein complexes: Insights from benchmarking template-based docking.
    Chakravarty D, McElfresh GW, Kundrotas PJ, Vakser IA.
    Proteins; 2020 Aug 01; 88(8):1070-1081. PubMed ID: 31994759
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  • 16. Accounting for conformational changes during protein-protein docking.
    Zacharias M.
    Curr Opin Struct Biol; 2010 Apr 01; 20(2):180-6. PubMed ID: 20194014
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  • 19. FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking.
    Mashiach E, Nussinov R, Wolfson HJ.
    Nucleic Acids Res; 2010 Jul 01; 38(Web Server issue):W457-61. PubMed ID: 20460459
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  • 20. FireDock: a web server for fast interaction refinement in molecular docking.
    Mashiach E, Schneidman-Duhovny D, Andrusier N, Nussinov R, Wolfson HJ.
    Nucleic Acids Res; 2008 Jul 01; 36(Web Server issue):W229-32. PubMed ID: 18424796
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