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Journal Abstract Search

252 related items for PubMed ID: 22357132

  • 1. Accelerating large-scale protein structure alignments with graphics processing units.
    Pang B, Zhao N, Becchi M, Korkin D, Shyu CR.
    BMC Res Notes; 2012 Feb 22; 5():116. PubMed ID: 22357132
    [Abstract] [Full Text] [Related]

  • 2. Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.
    Pandit SB, Skolnick J.
    BMC Bioinformatics; 2008 Dec 12; 9():531. PubMed ID: 19077267
    [Abstract] [Full Text] [Related]

  • 3. Parallel Implementation of MAFFT on CUDA-Enabled Graphics Hardware.
    Zhu X, Li K, Salah A, Shi L, Li K.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Dec 12; 12(1):205-18. PubMed ID: 26357090
    [Abstract] [Full Text] [Related]

  • 4. Inference of dynamic spatial GRN models with multi-GPU evolutionary computation.
    Mousavi R, Konuru SH, Lobo D.
    Brief Bioinform; 2021 Sep 02; 22(5):. PubMed ID: 33834216
    [Abstract] [Full Text] [Related]

  • 5. Pairwise sequence alignment for very long sequences on GPUs.
    Li J, Ranka S, Sahni S.
    Int J Bioinform Res Appl; 2014 Sep 02; 10(4-5):345-68. PubMed ID: 24989857
    [Abstract] [Full Text] [Related]

  • 6. Large-scale neural circuit mapping data analysis accelerated with the graphical processing unit (GPU).
    Shi Y, Veidenbaum AV, Nicolau A, Xu X.
    J Neurosci Methods; 2015 Jan 15; 239():1-10. PubMed ID: 25277633
    [Abstract] [Full Text] [Related]

  • 7. GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units.
    Cickovski T, Flor T, Irving-Sachs G, Novikov P, Parda J, Narasimhan G.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Jan 15; 12(2):445-54. PubMed ID: 26357230
    [Abstract] [Full Text] [Related]

  • 8. GPU technology as a platform for accelerating local complexity analysis of protein sequences.
    Papadopoulos A, Kirmitzoglou I, Promponas VJ, Theocharides T.
    Annu Int Conf IEEE Eng Med Biol Soc; 2013 Jan 15; 2013():2684-7. PubMed ID: 24110280
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  • 10. Parallel implementation of 3D protein structure similarity searches using a GPU and the CUDA.
    Mrozek D, Brożek M, Małysiak-Mrozek B.
    J Mol Model; 2014 Feb 15; 20(2):2067. PubMed ID: 24481593
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  • 12. Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform.
    Salavert Torres J, Blanquer Espert I, Domínguez AT, Hernández García V, Medina Castelló I, Tárraga Giménez J, Dopazo Blázquez J.
    IEEE/ACM Trans Comput Biol Bioinform; 2012 Feb 15; 9(4):1245-56. PubMed ID: 22450827
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  • 18. MrBayes tgMC³: a tight GPU implementation of MrBayes.
    Ling C, Hamada T, Bai J, Li X, Chesters D, Zheng W, Shi W.
    PLoS One; 2013 Feb 15; 8(4):e60667. PubMed ID: 23593277
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  • 19. NMF-mGPU: non-negative matrix factorization on multi-GPU systems.
    Mejía-Roa E, Tabas-Madrid D, Setoain J, García C, Tirado F, Pascual-Montano A.
    BMC Bioinformatics; 2015 Feb 13; 16():43. PubMed ID: 25887585
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