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Journal Abstract Search

461 related items for PubMed ID: 22434836

  • 1. CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.
    Park J, Costanzo MC, Balakrishnan R, Cherry JM, Hong EL.
    Database (Oxford); 2012; 2012():bas001. PubMed ID: 22434836
    [Abstract] [Full Text] [Related]

  • 2. Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.
    Costanzo MC, Park J, Balakrishnan R, Cherry JM, Hong EL.
    Database (Oxford); 2011; 2011():bar004. PubMed ID: 21411447
    [Abstract] [Full Text] [Related]

  • 3. Gene Ontology annotations at SGD: new data sources and annotation methods.
    Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D577-81. PubMed ID: 17982175
    [Abstract] [Full Text] [Related]

  • 4. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).
    Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM.
    Nucleic Acids Res; 2002 Jan 01; 30(1):69-72. PubMed ID: 11752257
    [Abstract] [Full Text] [Related]

  • 5. Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.
    Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.
    BMC Microbiol; 2009 Feb 19; 9 Suppl 1(Suppl 1):S8. PubMed ID: 19278556
    [Abstract] [Full Text] [Related]

  • 6. A sensitive method for computing GO-based functional similarities among genes with 'shallow annotation'.
    Chen X, Yang R, Xu J, Ma H, Chen S, Bian X, Liu L.
    Gene; 2012 Nov 01; 509(1):131-5. PubMed ID: 22903005
    [Abstract] [Full Text] [Related]

  • 7. A guide to best practices for Gene Ontology (GO) manual annotation.
    Balakrishnan R, Harris MA, Huntley R, Van Auken K, Cherry JM.
    Database (Oxford); 2013 Nov 01; 2013():bat054. PubMed ID: 23842463
    [Abstract] [Full Text] [Related]

  • 8. Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.
    Christie KR, Hong EL, Cherry JM.
    Trends Microbiol; 2009 Jul 01; 17(7):286-94. PubMed ID: 19577472
    [Abstract] [Full Text] [Related]

  • 9. Quality of computationally inferred gene ontology annotations.
    Skunca N, Altenhoff A, Dessimoz C.
    PLoS Comput Biol; 2012 May 01; 8(5):e1002533. PubMed ID: 22693439
    [Abstract] [Full Text] [Related]

  • 10. AVID: an integrative framework for discovering functional relationships among proteins.
    Jiang T, Keating AE.
    BMC Bioinformatics; 2005 Jun 01; 6():136. PubMed ID: 15929793
    [Abstract] [Full Text] [Related]

  • 11. Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.
    Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D442-5. PubMed ID: 16381907
    [Abstract] [Full Text] [Related]

  • 12. Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.
    Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J.
    BMC Bioinformatics; 2015 Feb 14; 16():44. PubMed ID: 25886899
    [Abstract] [Full Text] [Related]

  • 13. Gene Ontology annotations and resources.
    Gene Ontology Consortium, Blake JA, Dolan M, Drabkin H, Hill DP, Li N, Sitnikov D, Bridges S, Burgess S, Buza T, McCarthy F, Peddinti D, Pillai L, Carbon S, Dietze H, Ireland A, Lewis SE, Mungall CJ, Gaudet P, Chrisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Bely B, Blatter M-, Bonilla C, Bouguerleret L, Boutet E, Breuza L, Bridge A, Chan WM, Chavali G, Coudert E, Dimmer E, Estreicher A, Famiglietti L, Feuermann M, Gos A, Gruaz-Gumowski N, Hieta R, Hinz C, Hulo C, Huntley R, James J, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Mutowo-Muellenet P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millán P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulgar R, Lomax J, Roncaglia P, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Giglio MG, Chang H-, Hunter S, McAnulla C, Mitchell A, Sangrador A, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall DM, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang S-, Petri V, Lowry T, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hitz BC, Hong EL, Karra K, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Huala E, Mi H, Thomas PD, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, Westerfield M.
    Nucleic Acids Res; 2013 Jan 14; 41(Database issue):D530-5. PubMed ID: 23161678
    [Abstract] [Full Text] [Related]

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    ; 2004 Jan 14. PubMed ID: 33001599
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  • 17. Interspecies gene function prediction using semantic similarity.
    Yu G, Luo W, Fu G, Wang J.
    BMC Syst Biol; 2016 Dec 23; 10(Suppl 4):121. PubMed ID: 28155711
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  • 20. False positive reduction in protein-protein interaction predictions using gene ontology annotations.
    Mahdavi MA, Lin YH.
    BMC Bioinformatics; 2007 Jul 23; 8():262. PubMed ID: 17645798
    [Abstract] [Full Text] [Related]

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