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Journal Abstract Search

284 related items for PubMed ID: 22538125

  • 1. Modeling nucleic acids.
    Sim AY, Minary P, Levitt M.
    Curr Opin Struct Biol; 2012 Jun; 22(3):273-8. PubMed ID: 22538125
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  • 2. 3D-NuS: A Web Server for Automated Modeling and Visualization of Non-Canonical 3-Dimensional Nucleic Acid Structures.
    Patro LPP, Kumar A, Kolimi N, Rathinavelan T.
    J Mol Biol; 2017 Aug 04; 429(16):2438-2448. PubMed ID: 28652006
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  • 4. A Unified Dynamic Programming Framework for the Analysis of Interacting Nucleic Acid Strands: Enhanced Models, Scalability, and Speed.
    Fornace ME, Porubsky NJ, Pierce NA.
    ACS Synth Biol; 2020 Oct 16; 9(10):2665-2678. PubMed ID: 32910644
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  • 8. Aromatic Base Stacking in DNA: From ab initio Calculations to Molecular Dynamics Simulations.
    Sponer J, Berger I, Spačková N, Leszczynski J, Hobza P.
    J Biomol Struct Dyn; 2000 Oct 16; 17 Suppl 1():1-24. PubMed ID: 22607400
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  • 10. Nucleic acid folding simulations using a physics-based atomistic free energy model.
    Mak CH.
    J Chem Phys; 2022 May 07; 156(17):174114. PubMed ID: 35525642
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  • 15. The proto-Nucleic Acid Builder: a software tool for constructing nucleic acid analogs.
    Alenaizan A, Barnett JL, Hud NV, Sherrill CD, Petrov AS.
    Nucleic Acids Res; 2021 Jan 11; 49(1):79-89. PubMed ID: 33300028
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  • 18. Prediction and design of DNA and RNA structures.
    Andersen ES.
    N Biotechnol; 2010 Jul 31; 27(3):184-93. PubMed ID: 20193785
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  • 20. RNAHelix: computational modeling of nucleic acid structures with Watson-Crick and non-canonical base pairs.
    Bhattacharyya D, Halder S, Basu S, Mukherjee D, Kumar P, Bansal M.
    J Comput Aided Mol Des; 2017 Feb 31; 31(2):219-235. PubMed ID: 28102461
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