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356 related items for PubMed ID: 22611043

  • 1. Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments.
    Nesvizhskii AI.
    Proteomics; 2012 May; 12(10):1639-55. PubMed ID: 22611043
    [Abstract] [Full Text] [Related]

  • 2. Computational detection of protein complexes in AP-MS experiments.
    Choi H.
    Proteomics; 2012 May; 12(10):1663-8. PubMed ID: 22711593
    [Abstract] [Full Text] [Related]

  • 3. ROCS: a reproducibility index and confidence score for interaction proteomics studies.
    Dazard JE, Saha S, Ewing RM.
    BMC Bioinformatics; 2012 Jun 08; 13():128. PubMed ID: 22682516
    [Abstract] [Full Text] [Related]

  • 4. A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis.
    Tucker G, Loh PR, Berger B.
    BMC Bioinformatics; 2013 Oct 04; 14():299. PubMed ID: 24093595
    [Abstract] [Full Text] [Related]

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  • 6. Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry.
    Lee CM, Adamchek C, Feke A, Nusinow DA, Gendron JM.
    Methods Mol Biol; 2017 Oct 04; 1610():231-249. PubMed ID: 28439867
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  • 9. Detection of protein complexes from affinity purification/mass spectrometry data.
    Cai B, Wang H, Zheng H, Wang H.
    BMC Syst Biol; 2012 Oct 04; 6 Suppl 3(Suppl 3):S4. PubMed ID: 23282282
    [Abstract] [Full Text] [Related]

  • 10. A novel scoring approach for protein co-purification data reveals high interaction specificity.
    Yu X, Ivanic J, Wallqvist A, Reifman J.
    PLoS Comput Biol; 2009 Sep 04; 5(9):e1000515. PubMed ID: 19779545
    [Abstract] [Full Text] [Related]

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  • 12. A two-step framework for inferring direct protein-protein interaction network from AP-MS data.
    Tian B, Zhao C, Gu F, He Z.
    BMC Syst Biol; 2017 Sep 21; 11(Suppl 4):82. PubMed ID: 28950876
    [Abstract] [Full Text] [Related]

  • 13. SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software.
    Teo G, Liu G, Zhang J, Nesvizhskii AI, Gingras AC, Choi H.
    J Proteomics; 2014 Apr 04; 100():37-43. PubMed ID: 24513533
    [Abstract] [Full Text] [Related]

  • 14. Protocol for affinity purification-mass spectrometry interactome profiling in larvae of Drosophila melanogaster.
    Guo Y, Hartson SD, Rogers J, Brooks-Kanost L, Brooks D, Geisbrecht ER.
    STAR Protoc; 2024 Jun 21; 5(2):103064. PubMed ID: 38743568
    [Abstract] [Full Text] [Related]

  • 15. Reinforce: An Ensemble Approach for Inferring PPI Network from AP-MS Data.
    Tian B, Duan Q, Zhao C, Teng B, He Z.
    IEEE/ACM Trans Comput Biol Bioinform; 2019 Jun 21; 16(2):365-376. PubMed ID: 28534782
    [Abstract] [Full Text] [Related]

  • 16. The bait compatibility index: computational bait selection for interaction proteomics experiments.
    Saha S, Kaur P, Ewing RM.
    J Proteome Res; 2010 Oct 01; 9(10):4972-81. PubMed ID: 20731387
    [Abstract] [Full Text] [Related]

  • 17. Recent progress in mass spectrometry-based strategies for elucidating protein-protein interactions.
    Low TY, Syafruddin SE, Mohtar MA, Vellaichamy A, A Rahman NS, Pung YF, Tan CSH.
    Cell Mol Life Sci; 2021 Jul 01; 78(13):5325-5339. PubMed ID: 34046695
    [Abstract] [Full Text] [Related]

  • 18. Identifying novel protein complexes in cancer cells using epitope-tagging of endogenous human genes and affinity-purification mass spectrometry.
    Song J, Hao Y, Du Z, Wang Z, Ewing RM.
    J Proteome Res; 2012 Dec 07; 11(12):5630-41. PubMed ID: 23106643
    [Abstract] [Full Text] [Related]

  • 19. A Tag-Based Affinity Purification Mass Spectrometry Workflow for Systematic Isolation of the Human Mitochondrial Protein Complexes.
    Wu Z, Malty R, Moutaoufik MT, Zhang Q, Jessulat M, Babu M.
    Adv Exp Med Biol; 2019 Dec 07; 1158():83-100. PubMed ID: 31452137
    [Abstract] [Full Text] [Related]

  • 20. SAINTq: Scoring protein-protein interactions in affinity purification - mass spectrometry experiments with fragment or peptide intensity data.
    Teo G, Koh H, Fermin D, Lambert JP, Knight JD, Gingras AC, Choi H.
    Proteomics; 2016 Aug 07; 16(15-16):2238-45. PubMed ID: 27119218
    [Abstract] [Full Text] [Related]

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