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Journal Abstract Search

111 related items for PubMed ID: 22711591

  • 1. Protein complexes and interaction networks.
    Gingras AC, Nesvizhskii A.
    Proteomics; 2012 May; 12(10):1475-7. PubMed ID: 22711591
    [No Abstract] [Full Text] [Related]

  • 2. Three-dimensional modeling of protein interactions and complexes is going 'omics.
    Stein A, Mosca R, Aloy P.
    Curr Opin Struct Biol; 2011 Apr; 21(2):200-8. PubMed ID: 21320770
    [Abstract] [Full Text] [Related]

  • 3. Progress and challenges in predicting protein-protein interaction sites.
    Ezkurdia I, Bartoli L, Fariselli P, Casadio R, Valencia A, Tress ML.
    Brief Bioinform; 2009 May; 10(3):233-46. PubMed ID: 19346321
    [Abstract] [Full Text] [Related]

  • 4. A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification.
    Yu L, Gao L, Li K, Zhao Y, Chiu DK.
    Comput Biol Chem; 2011 Oct 12; 35(5):298-307. PubMed ID: 22000801
    [Abstract] [Full Text] [Related]

  • 5. Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks.
    Patil A, Nakamura H.
    FEBS Lett; 2006 Apr 03; 580(8):2041-5. PubMed ID: 16542654
    [Abstract] [Full Text] [Related]

  • 6. STRING 8--a global view on proteins and their functional interactions in 630 organisms.
    Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C.
    Nucleic Acids Res; 2009 Jan 03; 37(Database issue):D412-6. PubMed ID: 18940858
    [Abstract] [Full Text] [Related]

  • 7. Identifying components of complexes.
    Goffard N, Weiller G.
    Methods Mol Biol; 2008 Jan 03; 453():257-65. PubMed ID: 18712308
    [Abstract] [Full Text] [Related]

  • 8. Predicting protein complexes by data integration of different types of interactions.
    Tan PP, Dargahi D, Pio F.
    Int J Comput Biol Drug Des; 2010 Jan 03; 3(1):19-30. PubMed ID: 20693608
    [Abstract] [Full Text] [Related]

  • 9. Protein complex analysis: From raw protein lists to protein interaction networks.
    Meysman P, Titeca K, Eyckerman S, Tavernier J, Goethals B, Martens L, Valkenborg D, Laukens K.
    Mass Spectrom Rev; 2017 Sep 03; 36(5):600-614. PubMed ID: 26709718
    [Abstract] [Full Text] [Related]

  • 10. Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.
    Del Mondo G, Eveillard D, Rusu I.
    Bioinformatics; 2009 Apr 01; 25(7):926-32. PubMed ID: 19223451
    [Abstract] [Full Text] [Related]

  • 11. PROCOS: computational analysis of protein-protein complexes.
    Fink F, Hochrein J, Wolowski V, Merkl R, Gronwald W.
    J Comput Chem; 2011 Sep 01; 32(12):2575-86. PubMed ID: 21630291
    [Abstract] [Full Text] [Related]

  • 12. Deciphering Supramolecular Structures with Protein-Protein Interaction Network Modeling.
    Tsuji T, Yoda T, Shirai T.
    Sci Rep; 2015 Nov 09; 5():16341. PubMed ID: 26549015
    [Abstract] [Full Text] [Related]

  • 13. Interactome3D: adding structural details to protein networks.
    Mosca R, Céol A, Aloy P.
    Nat Methods; 2013 Jan 09; 10(1):47-53. PubMed ID: 23399932
    [Abstract] [Full Text] [Related]

  • 14. Investigating a macromolecular complex: the toolkit of methods.
    Perrakis A, Musacchio A, Cusack S, Petosa C.
    J Struct Biol; 2011 Aug 09; 175(2):106-12. PubMed ID: 21620973
    [Abstract] [Full Text] [Related]

  • 15. Evaluation of clustering algorithms for protein complex and protein interaction network assembly.
    Sardiu ME, Florens L, Washburn MP.
    J Proteome Res; 2009 Jun 09; 8(6):2944-52. PubMed ID: 19317493
    [Abstract] [Full Text] [Related]

  • 16. CABIN: collective analysis of biological interaction networks.
    Singhal M, Domico K.
    Comput Biol Chem; 2007 Jun 09; 31(3):222-5. PubMed ID: 17500038
    [Abstract] [Full Text] [Related]

  • 17. Databases of protein-protein interactions and complexes.
    Ooi HS, Schneider G, Chan YL, Lim TT, Eisenhaber B, Eisenhaber F.
    Methods Mol Biol; 2010 Jun 09; 609():145-59. PubMed ID: 20221918
    [Abstract] [Full Text] [Related]

  • 18. Flexible relaxation of rigid-body docking solutions.
    Król M, Tournier AL, Bates PA.
    Proteins; 2007 Jul 01; 68(1):159-69. PubMed ID: 17397060
    [Abstract] [Full Text] [Related]

  • 19. Computational detection of protein complexes in AP-MS experiments.
    Choi H.
    Proteomics; 2012 May 01; 12(10):1663-8. PubMed ID: 22711593
    [Abstract] [Full Text] [Related]

  • 20. Detection of functional modules from protein interaction networks with an enhanced random walk based algorithm.
    Cai B, Wang H, Zheng H, Wang H.
    Int J Comput Biol Drug Des; 2011 May 01; 4(3):290-306. PubMed ID: 21778561
    [Abstract] [Full Text] [Related]

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