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158 related items for PubMed ID: 22736799

  • 1. SplicerEX: a tool for the automated detection and classification of mRNA changes from conventional and splice-sensitive microarray expression data.
    Robinson TJ, Forte E, Salinas RE, Puri S, Marengo M, Garcia-Blanco MA, Luftig MA.
    RNA; 2012 Aug; 18(8):1435-45. PubMed ID: 22736799
    [Abstract] [Full Text] [Related]

  • 2. Epstein-Barr virus induces global changes in cellular mRNA isoform usage that are important for the maintenance of latency.
    Homa NJ, Salinas R, Forte E, Robinson TJ, Garcia-Blanco MA, Luftig MA.
    J Virol; 2013 Nov; 87(22):12291-301. PubMed ID: 24027308
    [Abstract] [Full Text] [Related]

  • 3. Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.
    Ha KCh, Coulombe-Huntington J, Majewski J.
    BMC Genomics; 2009 Nov 12; 10():519. PubMed ID: 19909511
    [Abstract] [Full Text] [Related]

  • 4. SplicerAV: a tool for mining microarray expression data for changes in RNA processing.
    Robinson TJ, Dinan MA, Dewhirst M, Garcia-Blanco MA, Pearson JL.
    BMC Bioinformatics; 2010 Feb 25; 11():108. PubMed ID: 20184770
    [Abstract] [Full Text] [Related]

  • 5. Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.
    Castle J, Garrett-Engele P, Armour CD, Duenwald SJ, Loerch PM, Meyer MR, Schadt EE, Stoughton R, Parrish ML, Shoemaker DD, Johnson JM.
    Genome Biol; 2003 Feb 25; 4(10):R66. PubMed ID: 14519201
    [Abstract] [Full Text] [Related]

  • 6. MADS+: discovery of differential splicing events from Affymetrix exon junction array data.
    Shen S, Warzecha CC, Carstens RP, Xing Y.
    Bioinformatics; 2010 Jan 15; 26(2):268-9. PubMed ID: 19933160
    [Abstract] [Full Text] [Related]

  • 7. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.
    BMC Genomics; 2008 Nov 07; 9():529. PubMed ID: 18990248
    [Abstract] [Full Text] [Related]

  • 8. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
    Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.
    BMC Genomics; 2006 Dec 27; 7():325. PubMed ID: 17192196
    [Abstract] [Full Text] [Related]

  • 9. P450arom gene expression in peripheral blood lymphocytes: identification of a cryptic splice site for exon-1 after Epstein-Barr virus transformation.
    Vottero A, Kirschner LS, Yue W, Brodie A, Stratakis CA.
    J Steroid Biochem Mol Biol; 1998 Mar 27; 64(5-6):245-50. PubMed ID: 9618025
    [Abstract] [Full Text] [Related]

  • 10. A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.
    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.
    Theor Biol Med Model; 2006 Apr 07; 3():19. PubMed ID: 16603076
    [Abstract] [Full Text] [Related]

  • 11. Exon-level transcriptome profiling in murine breast cancer reveals splicing changes specific to tumors with different metastatic abilities.
    Bemmo A, Dias C, Rose AA, Russo C, Siegel P, Majewski J.
    PLoS One; 2010 Aug 06; 5(8):e11981. PubMed ID: 20700505
    [Abstract] [Full Text] [Related]

  • 12. Implementation of exon arrays: alternative splicing during T-cell proliferation as determined by whole genome analysis.
    Whistler T, Chiang CF, Lonergan W, Hollier M, Unger ER.
    BMC Genomics; 2010 Sep 14; 11():496. PubMed ID: 20840771
    [Abstract] [Full Text] [Related]

  • 13. Quantitative and qualitative RNA-Seq-based evaluation of Epstein-Barr virus transcription in type I latency Burkitt's lymphoma cells.
    Lin Z, Xu G, Deng N, Taylor C, Zhu D, Flemington EK.
    J Virol; 2010 Dec 14; 84(24):13053-8. PubMed ID: 20943983
    [Abstract] [Full Text] [Related]

  • 14. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.
    Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.
    Genome Inform; 2006 Dec 14; 17(1):88-99. PubMed ID: 17503359
    [Abstract] [Full Text] [Related]

  • 15. Identification of low-abundance alternatively spliced mRNA variants by exon exclusive reverse transcriptase polymerase chain reaction.
    Wang F, Zhao Y, Hao Y, Tan Z.
    Anal Biochem; 2008 Dec 15; 383(2):307-10. PubMed ID: 18817741
    [Abstract] [Full Text] [Related]

  • 16. easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.
    Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW.
    BMC Bioinformatics; 2008 Oct 14; 9():432. PubMed ID: 18851762
    [Abstract] [Full Text] [Related]

  • 17. Identification of novel mRNA isoforms for human DNA polymerase beta.
    Chyan YJ, Strauss PR, Wood TG, Wilson SH.
    DNA Cell Biol; 1996 Aug 14; 15(8):653-9. PubMed ID: 8769567
    [Abstract] [Full Text] [Related]

  • 18. Down-regulation of BLIMP1α by the EBV oncogene, LMP-1, disrupts the plasma cell differentiation program and prevents viral replication in B cells: implications for the pathogenesis of EBV-associated B-cell lymphomas.
    Vrzalikova K, Vockerodt M, Leonard S, Bell A, Wei W, Schrader A, Wright KL, Kube D, Rowe M, Woodman CB, Murray PG.
    Blood; 2011 Jun 02; 117(22):5907-17. PubMed ID: 21411757
    [Abstract] [Full Text] [Related]

  • 19. Comparative proteomic analysis implicates COMMD proteins as Epstein-Barr virus targets in the BL41 Burkitt's lymphoma cell line.
    Gkiafi Z, Panayotou G.
    J Proteome Res; 2011 Jul 01; 10(7):2959-68. PubMed ID: 21615174
    [Abstract] [Full Text] [Related]

  • 20. Differential detection of alternatively spliced variants of Ciz1 in normal and cancer cells using a custom exon-junction microarray.
    Rahman FA, Aziz N, Coverley D.
    BMC Cancer; 2010 Sep 10; 10():482. PubMed ID: 20831784
    [Abstract] [Full Text] [Related]

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