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Journal Abstract Search

151 related items for PubMed ID: 22888987

  • 1. Towards biological characters of interactions between transcription factors and their DNA targets in mammals.
    Zheng G, Liu Q, Ding G, Wei C, Li Y.
    BMC Genomics; 2012 Aug 13; 13():388. PubMed ID: 22888987
    [Abstract] [Full Text] [Related]

  • 2. Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules.
    Acevedo-Luna N, Mariño-Ramírez L, Halbert A, Hansen U, Landsman D, Spouge JL.
    BMC Bioinformatics; 2016 Nov 21; 17(1):479. PubMed ID: 27871221
    [Abstract] [Full Text] [Related]

  • 3. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
    Oliver P, Peralta-Gil M, Tabche ML, Merino E.
    BMC Genomics; 2016 Aug 27; 17(1):686. PubMed ID: 27567672
    [Abstract] [Full Text] [Related]

  • 4. Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promoters.
    Lai FJ, Chiu CC, Yang TH, Huang YM, Wu WS.
    PLoS One; 2013 Aug 27; 8(12):e83791. PubMed ID: 24386279
    [Abstract] [Full Text] [Related]

  • 5. A balancing act in transcription regulation by response regulators: titration of transcription factor activity by decoy DNA binding sites.
    Gao R, Helfant LJ, Wu T, Li Z, Brokaw SE, Stock AM.
    Nucleic Acids Res; 2021 Nov 18; 49(20):11537-11549. PubMed ID: 34669947
    [Abstract] [Full Text] [Related]

  • 6. Identification and positional distribution analysis of transcription factor binding sites for genes from the wheat fl-cDNA sequences.
    Chen ZY, Guo XJ, Chen ZX, Chen WY, Wang JR.
    Biosci Biotechnol Biochem; 2017 Jun 18; 81(6):1125-1135. PubMed ID: 28485207
    [Abstract] [Full Text] [Related]

  • 7. Bayesian variable selection for gene expression modeling with regulatory motif binding sites in neuroinflammatory events.
    Liu KY, Zhou X, Kan K, Wong ST.
    Neuroinformatics; 2006 Jun 18; 4(1):95-117. PubMed ID: 16595861
    [Abstract] [Full Text] [Related]

  • 8. Discovering approximate-associated sequence patterns for protein-DNA interactions.
    Chan TM, Wong KC, Lee KH, Wong MH, Lau CK, Tsui SK, Leung KS.
    Bioinformatics; 2011 Feb 15; 27(4):471-8. PubMed ID: 21193520
    [Abstract] [Full Text] [Related]

  • 9. Building Transcription Factor Binding Site Models to Understand Gene Regulation in Plants.
    Lai X, Stigliani A, Vachon G, Carles C, Smaczniak C, Zubieta C, Kaufmann K, Parcy F.
    Mol Plant; 2019 Jun 03; 12(6):743-763. PubMed ID: 30447332
    [Abstract] [Full Text] [Related]

  • 10. A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae.
    Wu WS, Wei ML, Yeh CM, Chang DT.
    BMC Syst Biol; 2014 Jun 03; 8 Suppl 5(Suppl 5):S9. PubMed ID: 25560196
    [Abstract] [Full Text] [Related]

  • 11. Prediction and Analysis of Transcription Factor Binding Sites: Practical Examples and Case Studies Using R Programming.
    Muley VY.
    Methods Mol Biol; 2024 Jun 03; 2719():199-225. PubMed ID: 37803120
    [Abstract] [Full Text] [Related]

  • 12. Homeologs of Brassica SOC1, a central regulator of flowering time, are differentially regulated due to partitioning of evolutionarily conserved transcription factor binding sites in promoters.
    Sri T, Gupta B, Tyagi S, Singh A.
    Mol Phylogenet Evol; 2020 Jun 03; 147():106777. PubMed ID: 32126279
    [Abstract] [Full Text] [Related]

  • 13. A preliminary computational outputs versus experimental results: Application of sTRAP, a biophysical tool for the analysis of SNPs of transcription factor-binding sites.
    Moradifard S, Saghiri R, Ehsani P, Mirkhani F, Ebrahimi-Rad M.
    Mol Genet Genomic Med; 2020 May 03; 8(5):e1219. PubMed ID: 32155318
    [Abstract] [Full Text] [Related]

  • 14. Identifying cooperative transcription factors in yeast using multiple data sources.
    Lai FJ, Jhu MH, Chiu CC, Huang YM, Wu WS.
    BMC Syst Biol; 2014 May 03; 8 Suppl 5(Suppl 5):S2. PubMed ID: 25559499
    [Abstract] [Full Text] [Related]

  • 15. Functional redundancy of transcription factors explains why most binding targets of a transcription factor are not affected when the transcription factor is knocked out.
    Wu WS, Lai FJ.
    BMC Syst Biol; 2015 May 03; 9 Suppl 6(Suppl 6):S2. PubMed ID: 26678747
    [Abstract] [Full Text] [Related]

  • 16. Bioinformatic prediction of transcription factor binding sites at promoter regions of genes for photoperiod and vernalization responses in model and temperate cereal plants.
    Peng FY, Hu Z, Yang RC.
    BMC Genomics; 2016 Aug 08; 17():573. PubMed ID: 27503086
    [Abstract] [Full Text] [Related]

  • 17. Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome.
    Kuznetsov VA, Singh O, Jenjaroenpun P.
    BMC Genomics; 2010 Feb 10; 11 Suppl 1(Suppl 1):S12. PubMed ID: 20158869
    [Abstract] [Full Text] [Related]

  • 18. Transcription Factor Information System (TFIS): A Tool for Detection of Transcription Factor Binding Sites.
    Narad P, Kumar A, Chakraborty A, Patni P, Sengupta A, Wadhwa G, Upadhyaya KC.
    Interdiscip Sci; 2017 Sep 10; 9(3):378-391. PubMed ID: 27052996
    [Abstract] [Full Text] [Related]

  • 19. AURTHO: Autoregulation of transcription factors as facilitator of cis-acting element discovery.
    Anderssen S, Naômé A, Jadot C, Brans A, Tocquin P, Rigali S.
    Biochim Biophys Acta Gene Regul Mech; 2022 Jul 10; 1865(5):194847. PubMed ID: 35901946
    [Abstract] [Full Text] [Related]

  • 20. [The databases of transcription factors.].
    Chen HF, Wang JK.
    Yi Chuan; 2010 Oct 10; 32(10):1009-17. PubMed ID: 20943488
    [Abstract] [Full Text] [Related]

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