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Journal Abstract Search

321 related items for PubMed ID: 23071097

  • 1. Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments.
    Armean IM, Lilley KS, Trotter MW.
    Mol Cell Proteomics; 2013 Jan; 12(1):1-13. PubMed ID: 23071097
    [Abstract] [Full Text] [Related]

  • 2. Detection of protein complexes from affinity purification/mass spectrometry data.
    Cai B, Wang H, Zheng H, Wang H.
    BMC Syst Biol; 2012 Jan; 6 Suppl 3(Suppl 3):S4. PubMed ID: 23282282
    [Abstract] [Full Text] [Related]

  • 3. Identifying the topology of protein complexes from affinity purification assays.
    Friedel CC, Zimmer R.
    Bioinformatics; 2009 Aug 15; 25(16):2140-6. PubMed ID: 19505940
    [Abstract] [Full Text] [Related]

  • 4. A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis.
    Tucker G, Loh PR, Berger B.
    BMC Bioinformatics; 2013 Oct 04; 14():299. PubMed ID: 24093595
    [Abstract] [Full Text] [Related]

  • 5. Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments.
    Nesvizhskii AI.
    Proteomics; 2012 May 04; 12(10):1639-55. PubMed ID: 22611043
    [Abstract] [Full Text] [Related]

  • 6. Computational detection of protein complexes in AP-MS experiments.
    Choi H.
    Proteomics; 2012 May 04; 12(10):1663-8. PubMed ID: 22711593
    [Abstract] [Full Text] [Related]

  • 7. ROCS: a reproducibility index and confidence score for interaction proteomics studies.
    Dazard JE, Saha S, Ewing RM.
    BMC Bioinformatics; 2012 Jun 08; 13():128. PubMed ID: 22682516
    [Abstract] [Full Text] [Related]

  • 8. SAINT: probabilistic scoring of affinity purification-mass spectrometry data.
    Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI.
    Nat Methods; 2011 Jan 08; 8(1):70-3. PubMed ID: 21131968
    [Abstract] [Full Text] [Related]

  • 9. A novel scoring approach for protein co-purification data reveals high interaction specificity.
    Yu X, Ivanic J, Wallqvist A, Reifman J.
    PLoS Comput Biol; 2009 Sep 08; 5(9):e1000515. PubMed ID: 19779545
    [Abstract] [Full Text] [Related]

  • 10. A novel algorithm for detecting protein complexes with the breadth first search.
    Tang X, Wang J, Li M, He Y, Pan Y.
    Biomed Res Int; 2014 Sep 08; 2014():354539. PubMed ID: 24818139
    [Abstract] [Full Text] [Related]

  • 11. Protein complex analysis: From raw protein lists to protein interaction networks.
    Meysman P, Titeca K, Eyckerman S, Tavernier J, Goethals B, Martens L, Valkenborg D, Laukens K.
    Mass Spectrom Rev; 2017 Sep 08; 36(5):600-614. PubMed ID: 26709718
    [Abstract] [Full Text] [Related]

  • 12. GIBA: a clustering tool for detecting protein complexes.
    Moschopoulos CN, Pavlopoulos GA, Schneider R, Likothanassis SD, Kossida S.
    BMC Bioinformatics; 2009 Jun 16; 10 Suppl 6(Suppl 6):S11. PubMed ID: 19534736
    [Abstract] [Full Text] [Related]

  • 13. Construction of co-complex score matrix for protein complex prediction from AP-MS data.
    Xie Z, Kwoh CK, Li XL, Wu M.
    Bioinformatics; 2011 Jul 01; 27(13):i159-66. PubMed ID: 21685066
    [Abstract] [Full Text] [Related]

  • 14. A two-step framework for inferring direct protein-protein interaction network from AP-MS data.
    Tian B, Zhao C, Gu F, He Z.
    BMC Syst Biol; 2017 Sep 21; 11(Suppl 4):82. PubMed ID: 28950876
    [Abstract] [Full Text] [Related]

  • 15. SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments.
    Choi H, Glatter T, Gstaiger M, Nesvizhskii AI.
    J Proteome Res; 2012 Apr 06; 11(4):2619-24. PubMed ID: 22352807
    [Abstract] [Full Text] [Related]

  • 16. Identifying binary protein-protein interactions from affinity purification mass spectrometry data.
    Zhang XF, Ou-Yang L, Hu X, Dai DQ.
    BMC Genomics; 2015 Oct 05; 16():745. PubMed ID: 26438428
    [Abstract] [Full Text] [Related]

  • 17. SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software.
    Teo G, Liu G, Zhang J, Nesvizhskii AI, Gingras AC, Choi H.
    J Proteomics; 2014 Apr 04; 100():37-43. PubMed ID: 24513533
    [Abstract] [Full Text] [Related]

  • 18. Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.
    Vlasblom J, Wodak SJ.
    BMC Bioinformatics; 2009 Mar 30; 10():99. PubMed ID: 19331680
    [Abstract] [Full Text] [Related]

  • 19. Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data.
    Goldfarb D, Hast BE, Wang W, Major MB.
    J Proteome Res; 2014 Dec 05; 13(12):5944-55. PubMed ID: 25300367
    [Abstract] [Full Text] [Related]

  • 20. A Bayesian approach for estimating protein-protein interactions by integrating structural and non-structural biological data.
    Ur Rehman H, Bari I, Ali A, Mahmood H.
    Mol Biosyst; 2017 Nov 21; 13(12):2592-2602. PubMed ID: 29028065
    [Abstract] [Full Text] [Related]

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