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Journal Abstract Search

110 related items for PubMed ID: 23186137

  • 21. Dictionary of interfaces in proteins (DIP). Data bank of complementary molecular surface patches.
    Preissner R, Goede A, Frömmel C.
    J Mol Biol; 1998 Jul 17; 280(3):535-50. PubMed ID: 9665855
    [Abstract] [Full Text] [Related]

  • 22. CREDO: a protein-ligand interaction database for drug discovery.
    Schreyer A, Blundell T.
    Chem Biol Drug Des; 2009 Feb 17; 73(2):157-67. PubMed ID: 19207418
    [Abstract] [Full Text] [Related]

  • 23. SuperStar: improved knowledge-based interaction fields for protein binding sites.
    Verdonk ML, Cole JC, Watson P, Gillet V, Willett P.
    J Mol Biol; 2001 Mar 30; 307(3):841-59. PubMed ID: 11273705
    [Abstract] [Full Text] [Related]

  • 24. RosettaLigand docking with full ligand and receptor flexibility.
    Davis IW, Baker D.
    J Mol Biol; 2009 Jan 16; 385(2):381-92. PubMed ID: 19041878
    [Abstract] [Full Text] [Related]

  • 25. Multiple interaction regions in the orthosteric ligand binding domain of the α7 neuronal nicotinic acetylcholine receptor.
    Xiao Y, Hammond PS, Mazurov AA, Yohannes D.
    J Chem Inf Model; 2012 Nov 26; 52(11):3064-73. PubMed ID: 23092444
    [Abstract] [Full Text] [Related]

  • 26. A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach.
    Estrada T, Zhang B, Cicotti P, Armen RS, Taufer M.
    Comput Biol Med; 2012 Jul 26; 42(7):758-71. PubMed ID: 22658682
    [Abstract] [Full Text] [Related]

  • 27. Geometric similarities of protein-protein interfaces at atomic resolution are only observed within homologous families: an exhaustive structural classification study.
    Kinjo AR, Nakamura H.
    J Mol Biol; 2010 Jun 11; 399(3):526-40. PubMed ID: 20417638
    [Abstract] [Full Text] [Related]

  • 28. Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures.
    Morozova N, Allers J, Myers J, Shamoo Y.
    Bioinformatics; 2006 Nov 15; 22(22):2746-52. PubMed ID: 16966360
    [Abstract] [Full Text] [Related]

  • 29. Estimating protein-ligand binding free energy: atomic solvation parameters for partition coefficient and solvation free energy calculation.
    Pei J, Wang Q, Zhou J, Lai L.
    Proteins; 2004 Dec 01; 57(4):651-64. PubMed ID: 15390269
    [Abstract] [Full Text] [Related]

  • 30. The use of protein-ligand interaction fingerprints in docking.
    Brewerton SC.
    Curr Opin Drug Discov Devel; 2008 May 01; 11(3):356-64. PubMed ID: 18428089
    [Abstract] [Full Text] [Related]

  • 31. The use of composite crystal-field environments in molecular recognition and the de novo design of protein ligands.
    Klebe G.
    J Mol Biol; 1994 Mar 25; 237(2):212-35. PubMed ID: 8126735
    [Abstract] [Full Text] [Related]

  • 32. Conformational diversity of ligands bound to proteins.
    Stockwell GR, Thornton JM.
    J Mol Biol; 2006 Mar 03; 356(4):928-44. PubMed ID: 16405908
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  • 35. Ligand mapping on protein surfaces by the 3D-RISM theory: toward computational fragment-based drug design.
    Imai T, Oda K, Kovalenko A, Hirata F, Kidera A.
    J Am Chem Soc; 2009 Sep 02; 131(34):12430-40. PubMed ID: 19655800
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  • 40. Domain-based small molecule binding site annotation.
    Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW.
    BMC Bioinformatics; 2006 Mar 17; 7():152. PubMed ID: 16545112
    [Abstract] [Full Text] [Related]

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