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Pubmed for Handhelds

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Journal Abstract Search

243 related items for PubMed ID: 23221174

  • 1. The eFIP system for text mining of protein interaction networks of phosphorylated proteins.
    Tudor CO, Arighi CN, Wang Q, Wu CH, Vijay-Shanker K.
    Database (Oxford); 2012; 2012():bas044. PubMed ID: 23221174
    [Abstract] [Full Text] [Related]

  • 2. Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.
    Tudor CO, Ross KE, Li G, Vijay-Shanker K, Wu CH, Arighi CN.
    Database (Oxford); 2015; 2015():. PubMed ID: 25833953
    [Abstract] [Full Text] [Related]

  • 3. RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
    Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH.
    Database (Oxford); 2014; 2014():. PubMed ID: 25122463
    [Abstract] [Full Text] [Related]

  • 4. Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature.
    Wang Q, Ross KE, Huang H, Ren J, Li G, Vijay-Shanker K, Wu CH, Arighi CN.
    Methods Mol Biol; 2017; 1558():213-232. PubMed ID: 28150240
    [Abstract] [Full Text] [Related]

  • 5. Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.
    Islamaj Dogan R, Kim S, Chatr-Aryamontri A, Wei CH, Comeau DC, Antunes R, Matos S, Chen Q, Elangovan A, Panyam NC, Verspoor K, Liu H, Wang Y, Liu Z, Altinel B, Hüsünbeyi ZM, Özgür A, Fergadis A, Wang CK, Dai HJ, Tran T, Kavuluru R, Luo L, Steppi A, Zhang J, Qu J, Lu Z.
    Database (Oxford); 2019 Jan 01; 2019():. PubMed ID: 30689846
    [Abstract] [Full Text] [Related]

  • 6. Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.
    Ross KE, Arighi CN, Ren J, Huang H, Wu CH.
    Database (Oxford); 2013 Jan 01; 2013():bat038. PubMed ID: 23749465
    [Abstract] [Full Text] [Related]

  • 7. eFIP: a tool for mining functional impact of phosphorylation from literature.
    Arighi CN, Siu AY, Tudor CO, Nchoutmboube JA, Wu CH, Shanker VK.
    Methods Mol Biol; 2011 Jan 01; 694():63-75. PubMed ID: 21082428
    [Abstract] [Full Text] [Related]

  • 8. BioCreative III interactive task: an overview.
    Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.
    BMC Bioinformatics; 2011 Oct 03; 12 Suppl 8(Suppl 8):S4. PubMed ID: 22151968
    [Abstract] [Full Text] [Related]

  • 9. Overview of the BioCreative III Workshop.
    Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.
    BMC Bioinformatics; 2011 Oct 03; 12 Suppl 8(Suppl 8):S1. PubMed ID: 22151647
    [Abstract] [Full Text] [Related]

  • 10. iPTMnet: an integrated resource for protein post-translational modification network discovery.
    Huang H, Arighi CN, Ross KE, Ren J, Li G, Chen SC, Wang Q, Cowart J, Vijay-Shanker K, Wu CH.
    Nucleic Acids Res; 2018 Jan 04; 46(D1):D542-D550. PubMed ID: 29145615
    [Abstract] [Full Text] [Related]

  • 11. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
    Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A.
    BMC Bioinformatics; 2011 Oct 03; 12 Suppl 8(Suppl 8):S3. PubMed ID: 22151929
    [Abstract] [Full Text] [Related]

  • 12. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
    Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C.
    Database (Oxford); 2013 Oct 03; 2013():bas056. PubMed ID: 23327936
    [Abstract] [Full Text] [Related]

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  • 15. Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts.
    Wei CH, Harris BR, Li D, Berardini TZ, Huala E, Kao HY, Lu Z.
    Database (Oxford); 2012 Oct 03; 2012():bas041. PubMed ID: 23160414
    [Abstract] [Full Text] [Related]

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  • 17. Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.
    Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.
    Genome Biol; 2008 Oct 03; 9 Suppl 2(Suppl 2):S1. PubMed ID: 18834487
    [Abstract] [Full Text] [Related]

  • 18. Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II.
    Lu Z, Hirschman L.
    Database (Oxford); 2012 Oct 03; 2012():bas043. PubMed ID: 23160416
    [Abstract] [Full Text] [Related]

  • 19. Literature mining and database annotation of protein phosphorylation using a rule-based system.
    Hu ZZ, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH.
    Bioinformatics; 2005 Jun 01; 21(11):2759-65. PubMed ID: 15814565
    [Abstract] [Full Text] [Related]

  • 20. Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology.
    Ross KE, Natale DA, Arighi C, Chen SC, Huang H, Li G, Ren J, Wang M, Vijay-Shanker K, Wu CH.
    CEUR Workshop Proc; 2016 Aug 01; 1747():. PubMed ID: 28706471
    [Abstract] [Full Text] [Related]

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