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Journal Abstract Search

161 related items for PubMed ID: 23292740

  • 21. Identification of key player genes in gene regulatory networks.
    Nazarieh M, Wiese A, Will T, Hamed M, Helms V.
    BMC Syst Biol; 2016 Sep 06; 10(1):88. PubMed ID: 27599550
    [Abstract] [Full Text] [Related]

  • 22. An extended gene protein/products Boolean network model including post-transcriptional regulation.
    Benso A, Di Carlo S, Politano G, Savino A, Vasciaveo A.
    Theor Biol Med Model; 2014 May 07; 11 Suppl 1(Suppl 1):S5. PubMed ID: 25080304
    [Abstract] [Full Text] [Related]

  • 23. Diversity of temporal correlations between genes in models of noisy and noiseless gene networks.
    Ribeiro AS, Lloyd-Price J, Chowdhury S, Yli-Harja O.
    Biosystems; 2011 May 07; 104(2-3):136-44. PubMed ID: 21356270
    [Abstract] [Full Text] [Related]

  • 24. BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks.
    Guziolowski C, Bourdé A, Moreews F, Siegel A.
    BMC Genomics; 2009 May 26; 10():244. PubMed ID: 19470162
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  • 25. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization.
    Li M, Yang J, Wu FX, Pan Y, Wang J.
    Bioinformatics; 2018 May 01; 34(9):1597-1599. PubMed ID: 29293938
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  • 26. PetriScape - A plugin for discrete Petri net simulations in Cytoscape.
    Almeida D, Azevedo V, Silva A, Baumbach J.
    J Integr Bioinform; 2016 Jun 04; 13(1):284. PubMed ID: 27402693
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  • 27. Automated Synthesis and Analysis of Switching Gene Regulatory Networks.
    Shavit Y, Yordanov B, Dunn SJ, Wintersteiger CM, Otani T, Hamadi Y, Livesey FJ, Kugler H.
    Biosystems; 2016 Aug 04; 146():26-34. PubMed ID: 27178783
    [Abstract] [Full Text] [Related]

  • 28. XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications.
    Lima DB, Zhu Y, Liu F.
    J Proteome Res; 2021 Apr 02; 20(4):1943-1950. PubMed ID: 33689356
    [Abstract] [Full Text] [Related]

  • 29. Modeling stochasticity and robustness in gene regulatory networks.
    Garg A, Mohanram K, Di Cara A, De Micheli G, Xenarios I.
    Bioinformatics; 2009 Jun 15; 25(12):i101-9. PubMed ID: 19477975
    [Abstract] [Full Text] [Related]

  • 30. Criticality in cell differentiation.
    Bose I, Pal M.
    J Biosci; 2017 Dec 15; 42(4):683-693. PubMed ID: 29229886
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  • 31. Transition state characteristics during cell differentiation.
    Brackston RD, Lakatos E, Stumpf MPH.
    PLoS Comput Biol; 2018 Sep 15; 14(9):e1006405. PubMed ID: 30235202
    [Abstract] [Full Text] [Related]

  • 32. SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks.
    Westenberg MA, Roerdink JB, Kuipers OP, van Hijum SA.
    Bioinformatics; 2010 Nov 15; 26(22):2922-3. PubMed ID: 20861033
    [Abstract] [Full Text] [Related]

  • 33. CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis.
    Wu L, Li M, Wang J, Wu FX.
    Bioinformatics; 2018 Apr 15; 34(8):1428-1430. PubMed ID: 29186337
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  • 34. NetDS: a Cytoscape plugin to analyze the robustness of dynamics and feedforward/feedback loop structures of biological networks.
    Le DH, Kwon YK.
    Bioinformatics; 2011 Oct 01; 27(19):2767-8. PubMed ID: 21828085
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  • 35. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
    Doncheva NT, Morris JH, Gorodkin J, Jensen LJ.
    J Proteome Res; 2019 Feb 01; 18(2):623-632. PubMed ID: 30450911
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  • 36. Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.
    Dorier J, Crespo I, Niknejad A, Liechti R, Ebeling M, Xenarios I.
    BMC Bioinformatics; 2016 Oct 06; 17(1):410. PubMed ID: 27716031
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  • 37. CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer.
    Rubinacci S, Graudenzi A, Caravagna G, Mauri G, Osborne J, Pitt-Francis J, Antoniotti M.
    Cancer Inform; 2015 Oct 06; 14(Suppl 4):53-65. PubMed ID: 26380549
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  • 38. Stochastic multiple-valued gene networks.
    Zhu P, Han J.
    IEEE Trans Biomed Circuits Syst; 2014 Feb 06; 8(1):42-53. PubMed ID: 24681918
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  • 39. Network Building with the Cytoscape BioGateway App Explained in Five Use Cases.
    Puig RR, Holmås S, Mironov V, Kuiper M.
    Curr Protoc Bioinformatics; 2020 Dec 06; 72(1):e106. PubMed ID: 32986267
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  • 40. SELANSI: a toolbox for simulation of stochastic gene regulatory networks.
    Pájaro M, Otero-Muras I, Vázquez C, Alonso AA.
    Bioinformatics; 2018 Mar 01; 34(5):893-895. PubMed ID: 29040384
    [Abstract] [Full Text] [Related]

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