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Journal Abstract Search

841 related items for PubMed ID: 23368786

  • 1. Visualization of protein interaction networks: problems and solutions.
    Agapito G, Guzzi PH, Cannataro M.
    BMC Bioinformatics; 2013; 14 Suppl 1(Suppl 1):S1. PubMed ID: 23368786
    [Abstract] [Full Text] [Related]

  • 2. XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications.
    Lima DB, Zhu Y, Liu F.
    J Proteome Res; 2021 Apr 02; 20(4):1943-1950. PubMed ID: 33689356
    [Abstract] [Full Text] [Related]

  • 3. Protein-Protein Interaction Network Exploration Using Cytoscape.
    Majeed A, Mukhtar S.
    Methods Mol Biol; 2023 Apr 02; 2690():419-427. PubMed ID: 37450163
    [Abstract] [Full Text] [Related]

  • 4. OptFlux: an open-source software platform for in silico metabolic engineering.
    Rocha I, Maia P, Evangelista P, Vilaça P, Soares S, Pinto JP, Nielsen J, Patil KR, Ferreira EC, Rocha M.
    BMC Syst Biol; 2010 Apr 19; 4():45. PubMed ID: 20403172
    [Abstract] [Full Text] [Related]

  • 5. Integrated web visualizations for protein-protein interaction databases.
    Jeanquartier F, Jean-Quartier C, Holzinger A.
    BMC Bioinformatics; 2015 Jun 16; 16(1):195. PubMed ID: 26077899
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  • 6. Biological Network Inference and analysis using SEBINI and CABIN.
    Taylor R, Singhal M.
    Methods Mol Biol; 2009 Jun 16; 541():551-76. PubMed ID: 19381531
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  • 7. NAViGaTOR: Network Analysis, Visualization and Graphing Toronto.
    Brown KR, Otasek D, Ali M, McGuffin MJ, Xie W, Devani B, Toch IL, Jurisica I.
    Bioinformatics; 2009 Dec 15; 25(24):3327-9. PubMed ID: 19837718
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  • 8. ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.
    Huan T, Sivachenko AY, Harrison SH, Chen JY.
    BMC Bioinformatics; 2008 Aug 12; 9 Suppl 9(Suppl 9):S5. PubMed ID: 18793469
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  • 9. Visualization and analysis of biological networks.
    Millán PP.
    Methods Mol Biol; 2013 Aug 12; 1021():63-88. PubMed ID: 23715980
    [Abstract] [Full Text] [Related]

  • 10. Context-specific protein network miner--an online system for exploring context-specific protein interaction networks from the literature.
    Chowdhary R, Tan SL, Zhang J, Karnik S, Bajic VB, Liu JS.
    PLoS One; 2012 Aug 12; 7(4):e34480. PubMed ID: 22493694
    [Abstract] [Full Text] [Related]

  • 11. CySBGN: a Cytoscape plug-in to integrate SBGN maps.
    Gonçalves E, van Iersel M, Saez-Rodriguez J.
    BMC Bioinformatics; 2013 Jan 16; 14():17. PubMed ID: 23324051
    [Abstract] [Full Text] [Related]

  • 12. Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks.
    König M, Holzhütter HG.
    Genome Inform; 2010 Jan 16; 24():96-103. PubMed ID: 22081592
    [Abstract] [Full Text] [Related]

  • 13. SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more.
    Balci H, Dogrusoz U, Ozgul YZ, Atayev P.
    PLoS Comput Biol; 2022 Nov 16; 18(11):e1010635. PubMed ID: 36374853
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  • 14. APPINetwork: an R package for building and computational analysis of protein-protein interaction networks.
    Gosset S, Glatigny A, Gallopin M, Yi Z, Salé M, Mucchielli-Giorgi MH.
    PeerJ; 2022 Nov 16; 10():e14204. PubMed ID: 36353604
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  • 15. TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.
    Lepoivre C, Bergon A, Lopez F, Perumal NB, Nguyen C, Imbert J, Puthier D.
    BMC Bioinformatics; 2012 Jan 31; 13():19. PubMed ID: 22292669
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  • 16. CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components.
    Heberle H, Carazzolle MF, Telles GP, Meirelles GV, Minghim R.
    BMC Bioinformatics; 2017 Sep 13; 18(Suppl 10):395. PubMed ID: 28929969
    [Abstract] [Full Text] [Related]

  • 17. GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.
    Vlasblom J, Wu S, Pu S, Superina M, Liu G, Orsi C, Wodak SJ.
    Bioinformatics; 2006 Sep 01; 22(17):2178-9. PubMed ID: 16921162
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  • 18. BisoGenet: a new tool for gene network building, visualization and analysis.
    Martin A, Ochagavia ME, Rabasa LC, Miranda J, Fernandez-de-Cossio J, Bringas R.
    BMC Bioinformatics; 2010 Feb 17; 11():91. PubMed ID: 20163717
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  • 19. Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era.
    Praneenararat T, Takagi T, Iwasaki W.
    BMC Genomics; 2012 Feb 17; 13 Suppl 7(Suppl 7):S24. PubMed ID: 23281970
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  • 20. Identification of Protein Complexes by Using a Spatial and Temporal Active Protein Interaction Network.
    Li M, Meng X, Zheng R, Wu FX, Li Y, Pan Y, Wang J.
    IEEE/ACM Trans Comput Biol Bioinform; 2020 Feb 17; 17(3):817-827. PubMed ID: 28885159
    [Abstract] [Full Text] [Related]

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