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Journal Abstract Search

250 related items for PubMed ID: 23379655

  • 1.
    ; . PubMed ID:
    [No Abstract] [Full Text] [Related]

  • 2. puma: a Bioconductor package for propagating uncertainty in microarray analysis.
    Pearson RD, Liu X, Sanguinetti G, Milo M, Lawrence ND, Rattray M.
    BMC Bioinformatics; 2009 Jul 09; 10():211. PubMed ID: 19589155
    [Abstract] [Full Text] [Related]

  • 3. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.
    BMC Genomics; 2008 Nov 07; 9():529. PubMed ID: 18990248
    [Abstract] [Full Text] [Related]

  • 4. SigFuge: single gene clustering of RNA-seq reveals differential isoform usage among cancer samples.
    Kimes PK, Cabanski CR, Wilkerson MD, Zhao N, Johnson AR, Perou CM, Makowski L, Maher CA, Liu Y, Marron JS, Hayes DN.
    Nucleic Acids Res; 2014 Aug 07; 42(14):e113. PubMed ID: 25030904
    [Abstract] [Full Text] [Related]

  • 5. Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.
    Ha KCh, Coulombe-Huntington J, Majewski J.
    BMC Genomics; 2009 Nov 12; 10():519. PubMed ID: 19909511
    [Abstract] [Full Text] [Related]

  • 6. BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips.
    Turro E, Bochkina N, Hein AM, Richardson S.
    BMC Bioinformatics; 2007 Nov 12; 8():439. PubMed ID: 17997843
    [Abstract] [Full Text] [Related]

  • 7.
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  • 8. A large-scale comparative study of isoform expressions measured on four platforms.
    Zhang W, Petegrosso R, Chang JW, Sun J, Yong J, Chien J, Kuang R.
    BMC Genomics; 2020 Mar 30; 21(1):272. PubMed ID: 32228441
    [Abstract] [Full Text] [Related]

  • 9. Comprehensive exon array data processing method for quantitative analysis of alternative spliced variants.
    Chen P, Lepikhova T, Hu Y, Monni O, Hautaniemi S.
    Nucleic Acids Res; 2011 Oct 30; 39(18):e123. PubMed ID: 21745820
    [Abstract] [Full Text] [Related]

  • 10. GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarrays.
    Harris GM, Abbas S, Miles MF.
    BMC Genomics; 2021 Feb 01; 22(1):96. PubMed ID: 33522903
    [Abstract] [Full Text] [Related]

  • 11. MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays.
    Turro E, Lewin A, Rose A, Dallman MJ, Richardson S.
    Nucleic Acids Res; 2010 Jan 01; 38(1):e4. PubMed ID: 19854940
    [Abstract] [Full Text] [Related]

  • 12. A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.
    Liu X, Milo M, Lawrence ND, Rattray M.
    Bioinformatics; 2005 Sep 15; 21(18):3637-44. PubMed ID: 16020470
    [Abstract] [Full Text] [Related]

  • 13. A Brassica exon array for whole-transcript gene expression profiling.
    Love CG, Graham NS, O Lochlainn S, Bowen HC, May ST, White PJ, Broadley MR, Hammond JP, King GJ.
    PLoS One; 2010 Sep 16; 5(9):. PubMed ID: 20862292
    [Abstract] [Full Text] [Related]

  • 14. Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms.
    Dapas M, Kandpal M, Bi Y, Davuluri RV.
    Brief Bioinform; 2017 Mar 01; 18(2):260-269. PubMed ID: 26944083
    [Abstract] [Full Text] [Related]

  • 15. Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.
    Sásik R, Calvo E, Corbeil J.
    Bioinformatics; 2002 Dec 01; 18(12):1633-40. PubMed ID: 12490448
    [Abstract] [Full Text] [Related]

  • 16. Efficient RNA isoform identification and quantification from RNA-Seq data with network flows.
    Bernard E, Jacob L, Mairal J, Vert JP.
    Bioinformatics; 2014 Sep 01; 30(17):2447-55. PubMed ID: 24813214
    [Abstract] [Full Text] [Related]

  • 17. AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip expression arrays with respect to SNPs.
    Kumari S, Verma LK, Weller JW.
    BMC Bioinformatics; 2007 Jul 30; 8():276. PubMed ID: 17663786
    [Abstract] [Full Text] [Related]

  • 18. A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.
    Raghavachari N, Barb J, Yang Y, Liu P, Woodhouse K, Levy D, O'Donnell CJ, Munson PJ, Kato GJ.
    BMC Med Genomics; 2012 Jun 29; 5():28. PubMed ID: 22747986
    [Abstract] [Full Text] [Related]

  • 19. Including probe-level measurement error in robust mixture clustering of replicated microarray gene expression.
    Liu X, Rattray M.
    Stat Appl Genet Mol Biol; 2010 Jun 29; 9():Article42. PubMed ID: 21194414
    [Abstract] [Full Text] [Related]

  • 20. A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.
    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.
    Theor Biol Med Model; 2006 Apr 07; 3():19. PubMed ID: 16603076
    [Abstract] [Full Text] [Related]

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