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Journal Abstract Search

175 related items for PubMed ID: 23413436

  • 1. SPINAL: scalable protein interaction network alignment.
    Aladag AE, Erten C.
    Bioinformatics; 2013 Apr 01; 29(7):917-24. PubMed ID: 23413436
    [Abstract] [Full Text] [Related]

  • 2. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 3. BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks.
    Alkan F, Erten C.
    Bioinformatics; 2014 Feb 15; 30(4):531-9. PubMed ID: 24336414
    [Abstract] [Full Text] [Related]

  • 4. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
    Alkan F, Erten C.
    Bioinformatics; 2015 Jul 15; 31(14):2356-63. PubMed ID: 25788620
    [Abstract] [Full Text] [Related]

  • 5. LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.
    Hu J, Reinert K.
    Bioinformatics; 2015 Feb 01; 31(3):363-72. PubMed ID: 25282642
    [Abstract] [Full Text] [Related]

  • 6. LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules.
    Maskey S, Cho YR.
    BMC Genomics; 2019 Dec 24; 20(Suppl 9):964. PubMed ID: 31874635
    [Abstract] [Full Text] [Related]

  • 7. RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications.
    Alkan F, Erten C.
    Bioinformatics; 2017 Feb 15; 33(4):537-544. PubMed ID: 27797764
    [Abstract] [Full Text] [Related]

  • 8. PrimAlign: PageRank-inspired Markovian alignment for large biological networks.
    Kalecky K, Cho YR.
    Bioinformatics; 2018 Jul 01; 34(13):i537-i546. PubMed ID: 29949962
    [Abstract] [Full Text] [Related]

  • 9. L-GRAAL: Lagrangian graphlet-based network aligner.
    Malod-Dognin N, Pržulj N.
    Bioinformatics; 2015 Jul 01; 31(13):2182-9. PubMed ID: 25725498
    [Abstract] [Full Text] [Related]

  • 10. NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks.
    Hu J, Kehr B, Reinert K.
    Bioinformatics; 2014 Feb 15; 30(4):540-8. PubMed ID: 24336806
    [Abstract] [Full Text] [Related]

  • 11. NETAL: a new graph-based method for global alignment of protein-protein interaction networks.
    Neyshabur B, Khadem A, Hashemifar S, Arab SS.
    Bioinformatics; 2013 Jul 01; 29(13):1654-62. PubMed ID: 23696650
    [Abstract] [Full Text] [Related]

  • 12. Global alignment of protein-protein interaction networks.
    Mongiovì M, Sharan R.
    Methods Mol Biol; 2013 Jul 01; 939():21-34. PubMed ID: 23192538
    [Abstract] [Full Text] [Related]

  • 13. Global Biological Network Alignment by Using Efficient Memetic Algorithm.
    Maoguo Gong, Zhenglin Peng, Lijia Ma, Jiaxiang Huang.
    IEEE/ACM Trans Comput Biol Bioinform; 2016 Nov 01; 13(6):1117-1129. PubMed ID: 28055895
    [Abstract] [Full Text] [Related]

  • 14. Optimizing a global alignment of protein interaction networks.
    Chindelevitch L, Ma CY, Liao CS, Berger B.
    Bioinformatics; 2013 Nov 01; 29(21):2765-73. PubMed ID: 24048352
    [Abstract] [Full Text] [Related]

  • 15. DualAligner: a dual alignment-based strategy to align protein interaction networks.
    Seah BS, Bhowmick SS, Dewey CF.
    Bioinformatics; 2014 Sep 15; 30(18):2619-26. PubMed ID: 24872427
    [Abstract] [Full Text] [Related]

  • 16. Global alignment of protein-protein interaction networks by graph matching methods.
    Zaslavskiy M, Bach F, Vert JP.
    Bioinformatics; 2009 Jun 15; 25(12):i259-67. PubMed ID: 19477997
    [Abstract] [Full Text] [Related]

  • 17. CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways.
    Abaka G, Bıyıkoğlu T, Erten C.
    Bioinformatics; 2013 Jul 01; 29(13):i145-53. PubMed ID: 23812978
    [Abstract] [Full Text] [Related]

  • 18. Functionally guided alignment of protein interaction networks for module detection.
    Ali W, Deane CM.
    Bioinformatics; 2009 Dec 01; 25(23):3166-73. PubMed ID: 19797409
    [Abstract] [Full Text] [Related]

  • 19. ModuleAlign: module-based global alignment of protein-protein interaction networks.
    Hashemifar S, Ma J, Naveed H, Canzar S, Xu J.
    Bioinformatics; 2016 Sep 01; 32(17):i658-i664. PubMed ID: 27587686
    [Abstract] [Full Text] [Related]

  • 20. Domain-oriented edge-based alignment of protein interaction networks.
    Guo X, Hartemink AJ.
    Bioinformatics; 2009 Jun 15; 25(12):i240-6. PubMed ID: 19477994
    [Abstract] [Full Text] [Related]

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