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Journal Abstract Search

157 related items for PubMed ID: 23433242

  • 21. Utilization of Tissue Ploidy Level Variation in de Novo Transcriptome Assembly of Pinus sylvestris.
    Ojeda DI, Mattila TM, Ruttink T, Kujala ST, Kärkkäinen K, Verta JP, Pyhäjärvi T.
    G3 (Bethesda); 2019 Oct 07; 9(10):3409-3421. PubMed ID: 31427456
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  • 22. Short reads and nonmodel species: exploring the complexities of next-generation sequence assembly and SNP discovery in the absence of a reference genome.
    Everett MV, Grau ED, Seeb JE.
    Mol Ecol Resour; 2011 Mar 07; 11 Suppl 1():93-108. PubMed ID: 21429166
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  • 23. De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity.
    Iorizzo M, Senalik DA, Grzebelus D, Bowman M, Cavagnaro PF, Matvienko M, Ashrafi H, Van Deynze A, Simon PW.
    BMC Genomics; 2011 Aug 02; 12():389. PubMed ID: 21810238
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  • 24. Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing.
    Li X, Acharya A, Farmer AD, Crow JA, Bharti AK, Kramer RS, Wei Y, Han Y, Gou J, May GD, Monteros MJ, Brummer EC.
    BMC Genomics; 2012 Oct 29; 13():568. PubMed ID: 23107476
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  • 25. Illumina-based de novo transcriptome sequencing and analysis of Amanita exitialis basidiocarps.
    Li P, Deng WQ, Li TH, Song B, Shen YH.
    Gene; 2013 Dec 10; 532(1):63-71. PubMed ID: 24050899
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  • 26. Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence.
    Góngora-Castillo E, Buell CR.
    Nat Prod Rep; 2013 Apr 10; 30(4):490-500. PubMed ID: 23377493
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  • 27. Characterization of 954 bovine full-CDS cDNA sequences.
    Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.
    BMC Genomics; 2005 Nov 23; 6():166. PubMed ID: 16305752
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  • 28. SNP discovery in non-model organisms using 454 next generation sequencing.
    Wheat CW.
    Methods Mol Biol; 2012 Nov 23; 888():33-53. PubMed ID: 22665274
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  • 29. Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms.
    Haznedaroglu BZ, Reeves D, Rismani-Yazdi H, Peccia J.
    BMC Bioinformatics; 2012 Jul 18; 13():170. PubMed ID: 22808927
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  • 30. Removal of redundant contigs from de novo RNA-Seq assemblies via homology search improves accurate detection of differentially expressed genes.
    Ono H, Ishii K, Kozaki T, Ogiwara I, Kanekatsu M, Yamada T.
    BMC Genomics; 2015 Dec 04; 16():1031. PubMed ID: 26637306
    [Abstract] [Full Text] [Related]

  • 31. Optimizing de novo transcriptome assembly and extending genomic resources for striped catfish (Pangasianodon hypophthalmus).
    Thanh NM, Jung H, Lyons RE, Njaci I, Yoon BH, Chand V, Tuan NV, Thu VT, Mather P.
    Mar Genomics; 2015 Oct 04; 23():87-97. PubMed ID: 25979246
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  • 32. The complex task of choosing a de novo assembly: lessons from fungal genomes.
    Gallo JE, Muñoz JF, Misas E, McEwen JG, Clay OK.
    Comput Biol Chem; 2014 Dec 04; 53 Pt A():97-107. PubMed ID: 25262360
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  • 33. Genotyping-by-sequencing through transcriptomics: implementation in a range of crop species with varying reproductive habits and ploidy levels.
    Malmberg MM, Pembleton LW, Baillie RC, Drayton MC, Sudheesh S, Kaur S, Shinozuka H, Verma P, Spangenberg GC, Daetwyler HD, Forster JW, Cogan NOI.
    Plant Biotechnol J; 2018 Apr 04; 16(4):877-889. PubMed ID: 28913899
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  • 34. RNA-Seq transcriptome analysis to identify genes involved in metabolism-based diclofop resistance in Lolium rigidum.
    Gaines TA, Lorentz L, Figge A, Herrmann J, Maiwald F, Ott MC, Han H, Busi R, Yu Q, Powles SB, Beffa R.
    Plant J; 2014 Jun 04; 78(5):865-76. PubMed ID: 24654891
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  • 35. Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals.
    Taylor JF, Whitacre LK, Hoff JL, Tizioto PC, Kim J, Decker JE, Schnabel RD.
    Genet Sel Evol; 2016 Aug 17; 48(1):59. PubMed ID: 27534529
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  • 36. Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake.
    Milano I, Babbucci M, Panitz F, Ogden R, Nielsen RO, Taylor MI, Helyar SJ, Carvalho GR, Espiñeira M, Atanassova M, Tinti F, Maes GE, Patarnello T, FishPopTrace Consortium, Bargelloni L.
    PLoS One; 2011 Aug 17; 6(11):e28008. PubMed ID: 22132191
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  • 37. Genome-wide characterization and expression analysis of genetic variants in sweet orange.
    Jiao WB, Huang D, Xing F, Hu Y, Deng XX, Xu Q, Chen LL.
    Plant J; 2013 Sep 17; 75(6):954-64. PubMed ID: 23738603
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  • 38. Integrative structural annotation of de novo RNA-Seq provides an accurate reference gene set of the enormous genome of the onion (Allium cepa L.).
    Kim S, Kim MS, Kim YM, Yeom SI, Cheong K, Kim KT, Jeon J, Kim S, Kim DS, Sohn SH, Lee YH, Choi D.
    DNA Res; 2015 Feb 17; 22(1):19-27. PubMed ID: 25362073
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  • 39. SWEEP: A Tool for Filtering High-Quality SNPs in Polyploid Crops.
    Clevenger JP, Ozias-Akins P.
    G3 (Bethesda); 2015 Jul 06; 5(9):1797-803. PubMed ID: 26153076
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  • 40. Quick and efficient approach to develop genomic resources in orphan species: Application in Lavandula angustifolia.
    Fopa Fomeju B, Brunel D, Bérard A, Rivoal JB, Gallois P, Le Paslier MC, Bouverat-Bernier JP.
    PLoS One; 2020 Jul 06; 15(12):e0243853. PubMed ID: 33306734
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