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PUBMED FOR HANDHELDS

Journal Abstract Search


224 related items for PubMed ID: 23445355

  • 1. A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation.
    Howe GT, Yu J, Knaus B, Cronn R, Kolpak S, Dolan P, Lorenz WW, Dean JF.
    BMC Genomics; 2013 Feb 28; 14():137. PubMed ID: 23445355
    [Abstract] [Full Text] [Related]

  • 2. An Axiom SNP genotyping array for Douglas-fir.
    Howe GT, Jayawickrama K, Kolpak SE, Kling J, Trappe M, Hipkins V, Ye T, Guida S, Cronn R, Cushman SA, McEvoy S.
    BMC Genomics; 2020 Jan 03; 21(1):9. PubMed ID: 31900111
    [Abstract] [Full Text] [Related]

  • 3. A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings.
    Müller T, Ensminger I, Schmid KJ.
    BMC Genomics; 2012 Nov 28; 13():673. PubMed ID: 23190494
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  • 4. A long-read and short-read transcriptomics approach provides the first high-quality reference transcriptome and genome annotation for Pseudotsuga menziesii (Douglas-fir).
    Velasco VME, Ferreira A, Zaman S, Noordermeer D, Ensminger I, Wegrzyn JL.
    G3 (Bethesda); 2023 Feb 09; 13(2):. PubMed ID: 36454025
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  • 6. Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles.
    Cronn R, Dolan PC, Jogdeo S, Wegrzyn JL, Neale DB, St Clair JB, Denver DR.
    BMC Genomics; 2017 Jul 24; 18(1):558. PubMed ID: 28738815
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  • 7. A transcriptomic resource for Douglas-fir seed development and analysis of transcription during late megagametophyte development.
    Little SA, Boyes IG, Donaleshen K, von Aderkas P, Ehlting J.
    Plant Reprod; 2016 Dec 24; 29(4):273-286. PubMed ID: 27699505
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  • 10. Looking for the needle in a downsized haystack: Whole-exome sequencing unravels genomic signals of climatic adaptation in Douglas-fir (Pseudotsuga menziesii).
    George JP, Schueler S, Grabner M, Karanitsch-Ackerl S, Mayer K, Stierschneider M, Weissenbacher L, van Loo M.
    Ecol Evol; 2021 Jun 24; 11(12):8238-8253. PubMed ID: 34188883
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  • 11. A catalog of annotated high-confidence SNPs from exome capture and sequencing reveals highly polymorphic genes in Norway spruce (Picea abies).
    Azaiez A, Pavy N, Gérardi S, Laroche J, Boyle B, Gagnon F, Mottet MJ, Beaulieu J, Bousquet J.
    BMC Genomics; 2018 Dec 17; 19(1):942. PubMed ID: 30558528
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  • 12. Western white pine SNP discovery and high-throughput genotyping for breeding and conservation applications.
    Liu JJ, Sniezko RA, Sturrock RN, Chen H.
    BMC Plant Biol; 2014 Dec 30; 14():380. PubMed ID: 25547170
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  • 13. Phylogeography of Douglas-fir based on mitochondrial and chloroplast DNA sequences: testing hypotheses from the fossil record.
    Gugger PF, Sugita S, Cavender-Bares J.
    Mol Ecol; 2010 May 30; 19(9):1877-97. PubMed ID: 20374486
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  • 14. Transcriptomic monitoring of Douglas-fir heartwood formation.
    Delourme D, Brémaud L, Plazanet I, Pélissier P, Label P, Boizot N, Breton C, Durand S, Costa G.
    BMC Genom Data; 2023 Nov 20; 24(1):69. PubMed ID: 37986039
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  • 15. Introduction of non-native Douglas fir reduces leaf damage on beech saplings and mature trees in European beech forests.
    Matevski D, Foltran E, Lamersdorf N, Schuldt A.
    Ecol Appl; 2023 Mar 20; 33(2):e2786. PubMed ID: 36477972
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  • 16. Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success.
    Humble E, Thorne MA, Forcada J, Hoffman JI.
    BMC Res Notes; 2016 Aug 26; 9(1):418. PubMed ID: 27562535
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  • 17. Transcriptome responses to temperature, water availability and photoperiod are conserved among mature trees of two divergent Douglas-fir provenances from a coastal and an interior habitat.
    Hess M, Wildhagen H, Junker LV, Ensminger I.
    BMC Genomics; 2016 Aug 26; 17(1):682. PubMed ID: 27565139
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  • 18. North American Douglas-fir (P. menziesii) in Europe: establishment and reproduction within new geographic space without consequences for its genetic diversity.
    van Loo M, Lazic D, Chakraborty D, Hasenauer H, Schüler S.
    Biol Invasions; 2019 Aug 26; 21(11):3249-3267. PubMed ID: 31929722
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  • 19. The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae.
    Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Zimin AV, Puiu D, Pertea GM, Sezen UU, Casola C, Koralewski TE, Paul R, Gonzalez-Ibeas D, Zaman S, Cronn R, Yandell M, Holt C, Langley CH, Yorke JA, Salzberg SL, Wegrzyn JL.
    G3 (Bethesda); 2017 Sep 07; 7(9):3157-3167. PubMed ID: 28751502
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  • 20. De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.
    Ashrafi H, Hill T, Stoffel K, Kozik A, Yao J, Chin-Wo SR, Van Deynze A.
    BMC Genomics; 2012 Oct 30; 13():571. PubMed ID: 23110314
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