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Journal Abstract Search

208 related items for PubMed ID: 23446294

  • 1. Effectively addressing complex proteomic search spaces with peptide spectrum matching.
    Borges D, Perez-Riverol Y, Nogueira FC, Domont GB, Noda J, da Veiga Leprevost F, Besada V, França FM, Barbosa VC, Sánchez A, Carvalho PC.
    Bioinformatics; 2013 May 15; 29(10):1343-4. PubMed ID: 23446294
    [Abstract] [Full Text] [Related]

  • 2. HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions.
    Perez-Riverol Y, Sánchez A, Noda J, Borges D, Carvalho PC, Wang R, Vizcaíno JA, Betancourt L, Ramos Y, Duarte G, Nogueira FC, González LJ, Padrón G, Tabb DL, Hermjakob H, Domont GB, Besada V.
    Anal Chem; 2013 Apr 02; 85(7):3515-20. PubMed ID: 23448308
    [Abstract] [Full Text] [Related]

  • 3. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R, Trelle MB, Højrup P, Bunkenborg J, Jensen ON.
    J Proteome Res; 2005 Apr 02; 4(6):2338-47. PubMed ID: 16335983
    [Abstract] [Full Text] [Related]

  • 4. PTMSearchPlus: software tool for automated protein identification and post-translational modification characterization by integrating accurate intact protein mass and bottom-up mass spectrometric data searches.
    Kertesz V, Connelly HM, Erickson BK, Hettich RL.
    Anal Chem; 2009 Oct 15; 81(20):8387-95. PubMed ID: 19775152
    [Abstract] [Full Text] [Related]

  • 5. A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications.
    Lu B, Chen T.
    Bioinformatics; 2003 Oct 15; 19 Suppl 2():ii113-21. PubMed ID: 14534180
    [Abstract] [Full Text] [Related]

  • 6. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
    Heaven MR, Cobbs AL, Nei YW, Gutierrez DB, Herren AW, Gunawardena HP, Caprioli RM, Norris JL.
    Anal Chem; 2018 Aug 07; 90(15):8905-8911. PubMed ID: 29984981
    [Abstract] [Full Text] [Related]

  • 7. PIUS: peptide identification by unbiased search.
    Costa EP, Menschaert G, Luyten W, De Grave K, Ramon J.
    Bioinformatics; 2013 Aug 01; 29(15):1913-4. PubMed ID: 23709496
    [Abstract] [Full Text] [Related]

  • 8. DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.
    Halligan BD, Ruotti V, Twigger SN, Greene AS.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W376-81. PubMed ID: 15980493
    [Abstract] [Full Text] [Related]

  • 9. Chemical rule-based filtering of MS/MS spectra.
    Reiz B, Kertész-Farkas A, Pongor S, Myers MP.
    Bioinformatics; 2013 Apr 01; 29(7):925-32. PubMed ID: 23418188
    [Abstract] [Full Text] [Related]

  • 10. SpecOMS: A Full Open Modification Search Method Performing All-to-All Spectra Comparisons within Minutes.
    David M, Fertin G, Rogniaux H, Tessier D.
    J Proteome Res; 2017 Aug 04; 16(8):3030-3038. PubMed ID: 28660767
    [Abstract] [Full Text] [Related]

  • 11. SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis.
    Lima DB, de Lima TB, Balbuena TS, Neves-Ferreira AGC, Barbosa VC, Gozzo FC, Carvalho PC.
    J Proteomics; 2015 Nov 03; 129():51-55. PubMed ID: 25638023
    [Abstract] [Full Text] [Related]

  • 12. Peptide sequence tag-based blind identification of post-translational modifications with point process model.
    Liu C, Yan B, Song Y, Xu Y, Cai L.
    Bioinformatics; 2006 Jul 15; 22(14):e307-13. PubMed ID: 16873487
    [Abstract] [Full Text] [Related]

  • 13. MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines.
    Kwon T, Choi H, Vogel C, Nesvizhskii AI, Marcotte EM.
    J Proteome Res; 2011 Jul 01; 10(7):2949-58. PubMed ID: 21488652
    [Abstract] [Full Text] [Related]

  • 14. On the utility of isotopic fine structure mass spectrometry in protein identification.
    Miladinović SM, Kozhinov AN, Gorshkov MV, Tsybin YO.
    Anal Chem; 2012 May 01; 84(9):4042-51. PubMed ID: 22468966
    [Abstract] [Full Text] [Related]

  • 15. Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring.
    Ma CW, Lam H.
    J Proteome Res; 2014 May 02; 13(5):2262-71. PubMed ID: 24661115
    [Abstract] [Full Text] [Related]

  • 16. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
    Audain E, Uszkoreit J, Sachsenberg T, Pfeuffer J, Liang X, Hermjakob H, Sanchez A, Eisenacher M, Reinert K, Tabb DL, Kohlbacher O, Perez-Riverol Y.
    J Proteomics; 2017 Jan 06; 150():170-182. PubMed ID: 27498275
    [Abstract] [Full Text] [Related]

  • 17. Computational Methods in Mass Spectrometry-Based Proteomics.
    Li S, Tang H.
    Adv Exp Med Biol; 2016 Jan 06; 939():63-89. PubMed ID: 27807744
    [Abstract] [Full Text] [Related]

  • 18. Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate.
    Ye D, Fu Y, Sun RX, Wang HP, Yuan ZF, Chi H, He SM.
    Bioinformatics; 2010 Jun 15; 26(12):i399-406. PubMed ID: 20529934
    [Abstract] [Full Text] [Related]

  • 19. ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects.
    Zhang Y, Xu T, Shan B, Hart J, Aslanian A, Han X, Zong N, Li H, Choi H, Wang D, Acharya L, Du L, Vogt PK, Ping P, Yates JR.
    J Proteomics; 2015 Nov 03; 129():25-32. PubMed ID: 26196237
    [Abstract] [Full Text] [Related]

  • 20. Andromeda: a peptide search engine integrated into the MaxQuant environment.
    Cox J, Neuhauser N, Michalski A, Scheltema RA, Olsen JV, Mann M.
    J Proteome Res; 2011 Apr 01; 10(4):1794-805. PubMed ID: 21254760
    [Abstract] [Full Text] [Related]

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