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Journal Abstract Search

340 related items for PubMed ID: 23448308

  • 1. HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions.
    Perez-Riverol Y, Sánchez A, Noda J, Borges D, Carvalho PC, Wang R, Vizcaíno JA, Betancourt L, Ramos Y, Duarte G, Nogueira FC, González LJ, Padrón G, Tabb DL, Hermjakob H, Domont GB, Besada V.
    Anal Chem; 2013 Apr 02; 85(7):3515-20. PubMed ID: 23448308
    [Abstract] [Full Text] [Related]

  • 2. Empirical multidimensional space for scoring peptide spectrum matches in shotgun proteomics.
    Ivanov MV, Levitsky LI, Lobas AA, Panic T, Laskay ÜA, Mitulovic G, Schmid R, Pridatchenko ML, Tsybin YO, Gorshkov MV.
    J Proteome Res; 2014 Apr 04; 13(4):1911-20. PubMed ID: 24571493
    [Abstract] [Full Text] [Related]

  • 3. Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.
    Tu C, Sheng Q, Li J, Ma D, Shen X, Wang X, Shyr Y, Yi Z, Qu J.
    J Proteome Res; 2015 Nov 06; 14(11):4662-73. PubMed ID: 26390080
    [Abstract] [Full Text] [Related]

  • 4. Deconvolution of mixture spectra and increased throughput of peptide identification by utilization of intensified complementary ions formed in tandem mass spectrometry.
    Kryuchkov F, Verano-Braga T, Hansen TA, Sprenger RR, Kjeldsen F.
    J Proteome Res; 2013 Jul 05; 12(7):3362-71. PubMed ID: 23725413
    [Abstract] [Full Text] [Related]

  • 5. Rapid identification of protein biomarkers of Escherichia coli O157:H7 by matrix-assisted laser desorption ionization-time-of-flight-time-of-flight mass spectrometry and top-down proteomics.
    Fagerquist CK, Garbus BR, Miller WG, Williams KE, Yee E, Bates AH, Boyle S, Harden LA, Cooley MB, Mandrell RE.
    Anal Chem; 2010 Apr 01; 82(7):2717-25. PubMed ID: 20232878
    [Abstract] [Full Text] [Related]

  • 6. The problem with peptide presumption and low Mascot scoring.
    Cooper B.
    J Proteome Res; 2011 Mar 04; 10(3):1432-5. PubMed ID: 21229988
    [Abstract] [Full Text] [Related]

  • 7. MassWiz: a novel scoring algorithm with target-decoy based analysis pipeline for tandem mass spectrometry.
    Yadav AK, Kumar D, Dash D.
    J Proteome Res; 2011 May 06; 10(5):2154-60. PubMed ID: 21417338
    [Abstract] [Full Text] [Related]

  • 8. [A novel approach for peptide identification by tandem mass spectrometry].
    Sheng QH, Tang HX, Xie T, Wang LS, Ding DF.
    Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai); 2003 Aug 06; 35(8):734-40. PubMed ID: 12897969
    [Abstract] [Full Text] [Related]

  • 9. Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.
    Frewen BE, Merrihew GE, Wu CC, Noble WS, MacCoss MJ.
    Anal Chem; 2006 Aug 15; 78(16):5678-84. PubMed ID: 16906711
    [Abstract] [Full Text] [Related]

  • 10. N-terminal sequence tagging using reliably determined b2 ions: a useful approach to deconvolute tandem mass spectra of co-fragmented peptides in proteomics.
    Kryuchkov F, Verano-Braga T, Kjeldsen F.
    J Proteomics; 2014 May 30; 103():254-60. PubMed ID: 24726481
    [Abstract] [Full Text] [Related]

  • 11. Binomial probability distribution model-based protein identification algorithm for tandem mass spectrometry utilizing peak intensity information.
    Xiao CL, Chen XZ, Du YL, Sun X, Zhang G, He QY.
    J Proteome Res; 2013 Jan 04; 12(1):328-35. PubMed ID: 23163785
    [Abstract] [Full Text] [Related]

  • 12. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.
    Chen Y, Kwon SW, Kim SC, Zhao Y.
    J Proteome Res; 2005 Jan 04; 4(3):998-1005. PubMed ID: 15952748
    [Abstract] [Full Text] [Related]

  • 13. Enhanced characterization of complex proteomic samples using LC-MALDI MS/MS: exclusion of redundant peptides from MS/MS analysis in replicate runs.
    Chen HS, Rejtar T, Andreev V, Moskovets E, Karger BL.
    Anal Chem; 2005 Dec 01; 77(23):7816-25. PubMed ID: 16316193
    [Abstract] [Full Text] [Related]

  • 14. Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.
    Shen Y, Tolić N, Xie F, Zhao R, Purvine SO, Schepmoes AA, Moore RJ, Anderson GA, Smith RD.
    J Proteome Res; 2011 Sep 02; 10(9):3929-43. PubMed ID: 21678914
    [Abstract] [Full Text] [Related]

  • 15. Effectively addressing complex proteomic search spaces with peptide spectrum matching.
    Borges D, Perez-Riverol Y, Nogueira FC, Domont GB, Noda J, da Veiga Leprevost F, Besada V, França FM, Barbosa VC, Sánchez A, Carvalho PC.
    Bioinformatics; 2013 May 15; 29(10):1343-4. PubMed ID: 23446294
    [Abstract] [Full Text] [Related]

  • 16. Detection and identification of heme c-modified peptides by histidine affinity chromatography, high-performance liquid chromatography-mass spectrometry, and database searching.
    Merkley ED, Anderson BJ, Park J, Belchik SM, Shi L, Monroe ME, Smith RD, Lipton MS.
    J Proteome Res; 2012 Dec 07; 11(12):6147-58. PubMed ID: 23082897
    [Abstract] [Full Text] [Related]

  • 17. De novo sequencing methods in proteomics.
    Hughes C, Ma B, Lajoie GA.
    Methods Mol Biol; 2010 Dec 07; 604():105-21. PubMed ID: 20013367
    [Abstract] [Full Text] [Related]

  • 18. pNovo: de novo peptide sequencing and identification using HCD spectra.
    Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ.
    J Proteome Res; 2010 May 07; 9(5):2713-24. PubMed ID: 20329752
    [Abstract] [Full Text] [Related]

  • 19. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
    Heaven MR, Cobbs AL, Nei YW, Gutierrez DB, Herren AW, Gunawardena HP, Caprioli RM, Norris JL.
    Anal Chem; 2018 Aug 07; 90(15):8905-8911. PubMed ID: 29984981
    [Abstract] [Full Text] [Related]

  • 20. Analysis of low complex region peptides derived from mollusk shell matrix proteins using CID, high-energy collisional dissociation, and electron transfer dissociation on an LTQ-orbitrap: implications for peptide to spectrum match.
    Marie A, Alves S, Marie B, Dubost L, Bédouet L, Berland S.
    Proteomics; 2012 Oct 07; 12(19-20):3069-75. PubMed ID: 22888092
    [Abstract] [Full Text] [Related]

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