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Journal Abstract Search

188 related items for PubMed ID: 23509857

  • 1. Predicting protein-protein interactions from multimodal biological data sources via nonnegative matrix tri-factorization.
    Wang H, Huang H, Ding C, Nie F.
    J Comput Biol; 2013 Apr; 20(4):344-58. PubMed ID: 23509857
    [Abstract] [Full Text] [Related]

  • 2. Computational reconstruction of protein-protein interaction networks: algorithms and issues.
    Franzosa E, Linghu B, Xia Y.
    Methods Mol Biol; 2009 Apr; 541():89-100. PubMed ID: 19381528
    [Abstract] [Full Text] [Related]

  • 3. Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.
    Li D, Li J, Ouyang S, Wang J, Wu S, Wan P, Zhu Y, Xu X, He F.
    Proteomics; 2006 Jan; 6(2):456-61. PubMed ID: 16317777
    [Abstract] [Full Text] [Related]

  • 4. Correlated Protein Function Prediction via Maximization of Data-Knowledge Consistency.
    Wang H, Huang H, Ding C.
    J Comput Biol; 2015 Jun; 22(6):546-62. PubMed ID: 25922963
    [Abstract] [Full Text] [Related]

  • 5. Global alignment of protein-protein interaction networks.
    Mongiovì M, Sharan R.
    Methods Mol Biol; 2013 Jun; 939():21-34. PubMed ID: 23192538
    [Abstract] [Full Text] [Related]

  • 6. Essential protein identification based on essential protein-protein interaction prediction by Integrated Edge Weights.
    Jiang Y, Wang Y, Pang W, Chen L, Sun H, Liang Y, Blanzieri E.
    Methods; 2015 Jul 15; 83():51-62. PubMed ID: 25892709
    [Abstract] [Full Text] [Related]

  • 7. Pairwise alignment of protein interaction networks.
    Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A.
    J Comput Biol; 2006 Mar 15; 13(2):182-99. PubMed ID: 16597234
    [Abstract] [Full Text] [Related]

  • 8. The identification of similarities between biological networks: application to the metabolome and interactome.
    Cootes AP, Muggleton SH, Sternberg MJ.
    J Mol Biol; 2007 Jun 15; 369(4):1126-39. PubMed ID: 17466331
    [Abstract] [Full Text] [Related]

  • 9. Predicting protein complexes from weighted protein-protein interaction graphs with a novel unsupervised methodology: Evolutionary enhanced Markov clustering.
    Theofilatos K, Pavlopoulou N, Papasavvas C, Likothanassis S, Dimitrakopoulos C, Georgopoulos E, Moschopoulos C, Mavroudi S.
    Artif Intell Med; 2015 Mar 15; 63(3):181-9. PubMed ID: 25765008
    [Abstract] [Full Text] [Related]

  • 10. Predicting interactions in protein networks by completing defective cliques.
    Yu H, Paccanaro A, Trifonov V, Gerstein M.
    Bioinformatics; 2006 Apr 01; 22(7):823-9. PubMed ID: 16455753
    [Abstract] [Full Text] [Related]

  • 11. Estimating the size of the human interactome.
    Stumpf MP, Thorne T, de Silva E, Stewart R, An HJ, Lappe M, Wiuf C.
    Proc Natl Acad Sci U S A; 2008 May 13; 105(19):6959-64. PubMed ID: 18474861
    [Abstract] [Full Text] [Related]

  • 12. Inferring protein-protein interactions from multiple protein domain combinations.
    Kanaan SP, Huang C, Wuchty S, Chen DZ, Izaguirre JA.
    Methods Mol Biol; 2009 May 13; 541():43-59. PubMed ID: 19381530
    [Abstract] [Full Text] [Related]

  • 13. Protein functional properties prediction in sparsely-label PPI networks through regularized non-negative matrix factorization.
    Wu Q, Wang Z, Li C, Ye Y, Li Y, Sun N.
    BMC Syst Biol; 2015 May 13; 9 Suppl 1(Suppl 1):S9. PubMed ID: 25708164
    [Abstract] [Full Text] [Related]

  • 14. Using indirect protein interactions for the prediction of Gene Ontology functions.
    Chua HN, Sung WK, Wong L.
    BMC Bioinformatics; 2007 May 22; 8 Suppl 4(Suppl 4):S8. PubMed ID: 17570151
    [Abstract] [Full Text] [Related]

  • 15. Evolutionary conservation of domain-domain interactions.
    Itzhaki Z, Akiva E, Altuvia Y, Margalit H.
    Genome Biol; 2006 May 22; 7(12):R125. PubMed ID: 17184549
    [Abstract] [Full Text] [Related]

  • 16. Analyzing yeast protein-protein interaction data obtained from different sources.
    Bader GD, Hogue CW.
    Nat Biotechnol; 2002 Oct 22; 20(10):991-7. PubMed ID: 12355115
    [Abstract] [Full Text] [Related]

  • 17. Computationally predicting protein-RNA interactions using only positive and unlabeled examples.
    Cheng Z, Zhou S, Guan J.
    J Bioinform Comput Biol; 2015 Jun 22; 13(3):1541005. PubMed ID: 25790785
    [Abstract] [Full Text] [Related]

  • 18. Global alignment of multiple protein interaction networks with application to functional orthology detection.
    Singh R, Xu J, Berger B.
    Proc Natl Acad Sci U S A; 2008 Sep 02; 105(35):12763-8. PubMed ID: 18725631
    [Abstract] [Full Text] [Related]

  • 19. Transferring network topological knowledge for predicting protein-protein interactions.
    Xu Q, Xiang EW, Yang Q.
    Proteomics; 2011 Oct 02; 11(19):3818-25. PubMed ID: 21770035
    [Abstract] [Full Text] [Related]

  • 20. Filtering high-throughput protein-protein interaction data using a combination of genomic features.
    Patil A, Nakamura H.
    BMC Bioinformatics; 2005 Apr 18; 6():100. PubMed ID: 15833142
    [Abstract] [Full Text] [Related]

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