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Journal Abstract Search

130 related items for PubMed ID: 2352940

  • 1. Why do A.T base pairs inhibit Z-DNA formation?
    Dang LX, Pearlman DA, Kollman PA.
    Proc Natl Acad Sci U S A; 1990 Jun; 87(12):4630-4. PubMed ID: 2352940
    [Abstract] [Full Text] [Related]

  • 2. Free energy component analysis: application to the "Z-phobicity" of A-T base pairs.
    Singh SB, Pearlman DA, Kollman PA.
    J Biomol Struct Dyn; 1993 Oct; 11(2):303-11. PubMed ID: 8286058
    [Abstract] [Full Text] [Related]

  • 3. Structural analysis of Z-Z DNA junctions with A:A and T:T mismatched base pairs by NMR.
    Yang XL, Wang AH.
    Biochemistry; 1997 Apr 08; 36(14):4258-67. PubMed ID: 9100021
    [Abstract] [Full Text] [Related]

  • 4. Molecular mechanical studies of DNA flexibility: coupled backbone torsion angles and base-pair openings.
    Keepers JW, Kollman PA, Weiner PK, James TL.
    Proc Natl Acad Sci U S A; 1982 Sep 08; 79(18):5537-41. PubMed ID: 6957879
    [Abstract] [Full Text] [Related]

  • 5. Structure of d(CACGTG), a Z-DNA hexamer containing AT base pairs.
    Coll M, Fita I, Lloveras J, Subirana JA, Bardella F, Huynh-Dinh T, Igolen J.
    Nucleic Acids Res; 1988 Sep 12; 16(17):8695-705. PubMed ID: 3419929
    [Abstract] [Full Text] [Related]

  • 6. The length of a junction between the B and Z conformations in DNA is three base pairs or less.
    Dai ZY, Thomas GA, Evertsz E, Peticolas WL.
    Biochemistry; 1989 Aug 22; 28(17):6991-6. PubMed ID: 2819043
    [Abstract] [Full Text] [Related]

  • 7. Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops.
    Chattopadhyaya R, Grzeskowiak K, Dickerson RE.
    J Mol Biol; 1990 Jan 05; 211(1):189-210. PubMed ID: 2299669
    [Abstract] [Full Text] [Related]

  • 8. Chemical determinants of DNA bending at adenine-thymine tracts.
    Koo HS, Crothers DM.
    Biochemistry; 1987 Jun 16; 26(12):3745-8. PubMed ID: 3651409
    [Abstract] [Full Text] [Related]

  • 9. G . T base-pairs in a DNA helix: the crystal structure of d(G-G-G-G-T-C-C-C).
    Kneale G, Brown T, Kennard O, Rabinovich D.
    J Mol Biol; 1985 Dec 20; 186(4):805-14. PubMed ID: 4093986
    [Abstract] [Full Text] [Related]

  • 10. Effect of base pair A/C and G/T mismatches on the thermal stabilities of DNA oligomers that form B-Z junctions.
    Otokiti EO, Sheardy RD.
    Biochemistry; 1997 Sep 23; 36(38):11419-27. PubMed ID: 9298961
    [Abstract] [Full Text] [Related]

  • 11. AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m5CGTAm5CG).
    Wang AH, Hakoshima T, van der Marel G, van Boom JH, Rich A.
    Cell; 1984 May 23; 37(1):321-31. PubMed ID: 6722876
    [Abstract] [Full Text] [Related]

  • 12. Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA.
    Foloppe N, MacKerell AD.
    Biophys J; 1999 Jun 23; 76(6):3206-18. PubMed ID: 10354445
    [Abstract] [Full Text] [Related]

  • 13. Interaction of adenine adducts with thymine: a computational study.
    Sahu PK, Kuo CW, Lee SL.
    J Phys Chem B; 2007 Mar 22; 111(11):2991-8. PubMed ID: 17388410
    [Abstract] [Full Text] [Related]

  • 14. Sequence dependence of the B to Z transition in crystals and aqueous NaCl solutions for deoxyoligonucleotides containing all four canonical DNA bases.
    Wang Y, Thomas GA, Peticolas WL.
    Biochemistry; 1987 Aug 11; 26(16):5178-86. PubMed ID: 3663652
    [Abstract] [Full Text] [Related]

  • 15. Quantitative analysis of DNA secondary structure from solvent-accessible surfaces: the B- to Z-DNA transition as a model.
    Kagawa TF, Stoddard D, Zhou GW, Ho PS.
    Biochemistry; 1989 Aug 08; 28(16):6642-51. PubMed ID: 2790019
    [Abstract] [Full Text] [Related]

  • 16. Solution structure of the d(T-C-G-A) duplex at acidic pH. A parallel-stranded helix containing C+ .C, G.G and A.A pairs.
    Wang Y, Patel DJ.
    J Mol Biol; 1994 Sep 30; 242(4):508-26. PubMed ID: 7932707
    [Abstract] [Full Text] [Related]

  • 17. Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature.
    Leroy JL, Charretier E, Kochoyan M, Guéron M.
    Biochemistry; 1988 Dec 13; 27(25):8894-8. PubMed ID: 3233210
    [Abstract] [Full Text] [Related]

  • 18. Parallel DNA double helices incorporating isoG or m5isoC bases studied by FTIR, CD and molecular modeling.
    Geinguenaud F, Mondragon-Sanchez JA, Liquier J, Shchyolkina AK, Klement R, Arndt-Jovin DJ, Jovin TM, Taillandier E.
    Spectrochim Acta A Mol Biomol Spectrosc; 2005 Feb 13; 61(4):579-87. PubMed ID: 15649787
    [Abstract] [Full Text] [Related]

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