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Journal Abstract Search

109 related items for PubMed ID: 23567023

  • 1. A 20-state empirical amino-acid substitution model for green plant chloroplasts.
    Cox CJ, Foster PG.
    Mol Phylogenet Evol; 2013 Aug; 68(2):218-20. PubMed ID: 23567023
    [Abstract] [Full Text] [Related]

  • 2. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC, Susko E, Roger AJ.
    Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
    [Abstract] [Full Text] [Related]

  • 3. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.
    BMC Bioinformatics; 2005 Apr 01; 6():83. PubMed ID: 15804354
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  • 5. A site- and time-heterogeneous model of amino acid replacement.
    Blanquart S, Lartillot N.
    Mol Biol Evol; 2008 May 01; 25(5):842-58. PubMed ID: 18234708
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  • 7. SIMPROT: using an empirically determined indel distribution in simulations of protein evolution.
    Pang A, Smith AD, Nuin PA, Tillier ER.
    BMC Bioinformatics; 2005 Sep 27; 6():236. PubMed ID: 16188037
    [Abstract] [Full Text] [Related]

  • 8. Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation approaches.
    Pérez-Losada M, Høeg JT, Crandall KA.
    Syst Biol; 2004 Apr 27; 53(2):244-64. PubMed ID: 15205051
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  • 10. Bayesian inference of phylogeny and its impact on evolutionary biology.
    Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP.
    Science; 2001 Dec 14; 294(5550):2310-4. PubMed ID: 11743192
    [Abstract] [Full Text] [Related]

  • 11. Inclusion of chloroplast genes that have undergone expansion misleads phylogenetic reconstruction in the Chlorophyta.
    Novis PM, Smissen R, Buckley TR, Gopalakrishnan K, Visnovsky G.
    Am J Bot; 2013 Nov 14; 100(11):2194-209. PubMed ID: 24148615
    [Abstract] [Full Text] [Related]

  • 12. Phylogenetic relationships of the liverworts (Hepaticae), a basal embryophyte lineage, inferred from nucleotide sequence data of the chloroplast gene rbcL.
    Lewis LA, Mishler BD, Vilgalys R.
    Mol Phylogenet Evol; 1997 Jun 14; 7(3):377-93. PubMed ID: 9187096
    [Abstract] [Full Text] [Related]

  • 13. Pseudo-likelihood analysis of codon substitution models with neighbor-dependent rates.
    Christensen OF, Hobolth A, Jensen JL.
    J Comput Biol; 2005 Nov 14; 12(9):1166-82. PubMed ID: 16305327
    [Abstract] [Full Text] [Related]

  • 14. nQMaker: Estimating Time Nonreversible Amino Acid Substitution Models.
    Dang CC, Minh BQ, McShea H, Masel J, James JE, Vinh LS, Lanfear R.
    Syst Biol; 2022 Aug 10; 71(5):1110-1123. PubMed ID: 35139203
    [Abstract] [Full Text] [Related]

  • 15. A reversible jump method for Bayesian phylogenetic inference with a nonhomogeneous substitution model.
    Gowri-Shankar V, Rattray M.
    Mol Biol Evol; 2007 Jun 10; 24(6):1286-99. PubMed ID: 17347157
    [Abstract] [Full Text] [Related]

  • 16. Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution.
    Lemieux C, Otis C, Turmel M.
    Nature; 2000 Feb 10; 403(6770):649-52. PubMed ID: 10688199
    [Abstract] [Full Text] [Related]

  • 17. The devil in the details: interactions between the branch-length prior and likelihood model affect node support and branch lengths in the phylogeny of the Psoraceae.
    Ekman S, Blaalid R.
    Syst Biol; 2011 Jul 10; 60(4):541-61. PubMed ID: 21436107
    [Abstract] [Full Text] [Related]

  • 18. The phylogenetic utility of chloroplast and nuclear DNA markers and the phylogeny of the Rubiaceae tribe Spermacoceae.
    Kårehed J, Groeninckx I, Dessein S, Motley TJ, Bremer B.
    Mol Phylogenet Evol; 2008 Dec 10; 49(3):843-66. PubMed ID: 18950720
    [Abstract] [Full Text] [Related]

  • 19. Markov chain Monte Carlo computation of confidence intervals for substitution-rate variation in proteins.
    Rzhetsky A, Morozov P.
    Pac Symp Biocomput; 2001 Dec 10; ():203-14. PubMed ID: 11262941
    [Abstract] [Full Text] [Related]

  • 20. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
    Bastien O, Ortet P, Roy S, Maréchal E.
    BMC Bioinformatics; 2005 Mar 10; 6():49. PubMed ID: 15757521
    [Abstract] [Full Text] [Related]

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