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Journal Abstract Search

292 related items for PubMed ID: 23624262

  • 1. Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository.
    Campbell MP, Nguyen-Khuong T, Hayes CA, Flowers SA, Alagesan K, Kolarich D, Packer NH, Karlsson NG.
    Biochim Biophys Acta; 2014 Jan; 1844(1 Pt A):108-16. PubMed ID: 23624262
    [Abstract] [Full Text] [Related]

  • 2. Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.
    Everest-Dass AV, Kolarich D, Campbell MP, Packer NH.
    Rapid Commun Mass Spectrom; 2013 May 15; 27(9):931-9. PubMed ID: 23592194
    [Abstract] [Full Text] [Related]

  • 3. UniCarb-DB: An MS/MS Experimental Glycomic Fragmentation Database.
    Jin C, Venkatakrishnan V, Thomsson KA, Aoki NP, Shinmachi D, Aoki-Kinoshita KF, Hayes CA, Lisacek F, Karlsson NG.
    Methods Mol Biol; 2024 May 15; 2836():77-96. PubMed ID: 38995537
    [Abstract] [Full Text] [Related]

  • 4. A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum.
    Kumozaki S, Sato K, Sakakibara Y.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 May 15; 12(6):1267-74. PubMed ID: 26671799
    [Abstract] [Full Text] [Related]

  • 5. UniCarb-DB: a database resource for glycomic discovery.
    Hayes CA, Karlsson NG, Struwe WB, Lisacek F, Rudd PM, Packer NH, Campbell MP.
    Bioinformatics; 2011 May 01; 27(9):1343-4. PubMed ID: 21398669
    [Abstract] [Full Text] [Related]

  • 6. Structural feature ions for distinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS.
    Everest-Dass AV, Abrahams JL, Kolarich D, Packer NH, Campbell MP.
    J Am Soc Mass Spectrom; 2013 Jun 01; 24(6):895-906. PubMed ID: 23605685
    [Abstract] [Full Text] [Related]

  • 7. Discrimination of Isomers of Released N- and O-Glycans Using Diagnostic Product Ions in Negative Ion PGC-LC-ESI-MS/MS.
    Ashwood C, Lin CH, Thaysen-Andersen M, Packer NH.
    J Am Soc Mass Spectrom; 2018 Jun 01; 29(6):1194-1209. PubMed ID: 29603058
    [Abstract] [Full Text] [Related]

  • 8. Cross-Ring Fragmentation Patterns in the Tandem Mass Spectra of Underivatized Sialylated Oligosaccharides and Their Special Suitability for Spectrum Library Searching.
    De Leoz MLA, Simón-Manso Y, Woods RJ, Stein SE.
    J Am Soc Mass Spectrom; 2019 Mar 01; 30(3):426-438. PubMed ID: 30565163
    [Abstract] [Full Text] [Related]

  • 9. A platform for the structural characterization of glycans enzymatically released from glycosphingolipids extracted from tissue and cells.
    Anugraham M, Everest-Dass AV, Jacob F, Packer NH.
    Rapid Commun Mass Spectrom; 2015 Apr 15; 29(7):545-61. PubMed ID: 26212272
    [Abstract] [Full Text] [Related]

  • 10. Two-dimensional HPLC separation with reverse-phase-nano-LC-MS/MS for the characterization of glycan pools after labeling with 2-aminobenzamide.
    Wuhrer M, Koeleman CA, Deelder AM.
    Methods Mol Biol; 2009 Apr 15; 534():79-91. PubMed ID: 19277534
    [Abstract] [Full Text] [Related]

  • 11. Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study.
    Wada Y, Azadi P, Costello CE, Dell A, Dwek RA, Geyer H, Geyer R, Kakehi K, Karlsson NG, Kato K, Kawasaki N, Khoo KH, Kim S, Kondo A, Lattova E, Mechref Y, Miyoshi E, Nakamura K, Narimatsu H, Novotny MV, Packer NH, Perreault H, Peter-Katalinic J, Pohlentz G, Reinhold VN, Rudd PM, Suzuki A, Taniguchi N.
    Glycobiology; 2007 Apr 15; 17(4):411-22. PubMed ID: 17223647
    [Abstract] [Full Text] [Related]

  • 12. Databases and Associated Tools for Glycomics and Glycoproteomics.
    Lisacek F, Mariethoz J, Alocci D, Rudd PM, Abrahams JL, Campbell MP, Packer NH, Ståhle J, Widmalm G, Mullen E, Adamczyk B, Rojas-Macias MA, Jin C, Karlsson NG.
    Methods Mol Biol; 2017 Apr 15; 1503():235-264. PubMed ID: 27743371
    [Abstract] [Full Text] [Related]

  • 13. Separation and Identification of Permethylated Glycan Isomers by Reversed Phase NanoLC-NSI-MSn.
    Kurz S, Sheikh MO, Lu S, Wells L, Tiemeyer M.
    Mol Cell Proteomics; 2021 Apr 15; 20():100045. PubMed ID: 33376194
    [Abstract] [Full Text] [Related]

  • 14. Improvement of electrospray stability in negative ion mode for nano-PGC-LC-MS glycoanalysis via post-column make-up flow.
    Nguyen-Khuong T, Pralow A, Reichl U, Rapp E.
    Glycoconj J; 2018 Dec 15; 35(6):499-509. PubMed ID: 30467791
    [Abstract] [Full Text] [Related]

  • 15. Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping.
    Ashwood C, Pratt B, MacLean BX, Gundry RL, Packer NH.
    Analyst; 2019 Jun 07; 144(11):3601-3612. PubMed ID: 31065629
    [Abstract] [Full Text] [Related]

  • 16. GlycoMaster DB: software to assist the automated identification of N-linked glycopeptides by tandem mass spectrometry.
    He L, Xin L, Shan B, Lajoie GA, Ma B.
    J Proteome Res; 2014 Sep 05; 13(9):3881-95. PubMed ID: 25113421
    [Abstract] [Full Text] [Related]

  • 17. Towards a standardized bioinformatics infrastructure for N- and O-glycomics.
    Rojas-Macias MA, Mariethoz J, Andersson P, Jin C, Venkatakrishnan V, Aoki NP, Shinmachi D, Ashwood C, Madunic K, Zhang T, Miller RL, Horlacher O, Struwe WB, Watanabe Y, Okuda S, Levander F, Kolarich D, Rudd PM, Wuhrer M, Kettner C, Packer NH, Aoki-Kinoshita KF, Lisacek F, Karlsson NG.
    Nat Commun; 2019 Jul 22; 10(1):3275. PubMed ID: 31332201
    [Abstract] [Full Text] [Related]

  • 18. Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.
    Perez-Riverol Y, Wang R, Hermjakob H, Müller M, Vesada V, Vizcaíno JA.
    Biochim Biophys Acta; 2014 Jan 22; 1844(1 Pt A):63-76. PubMed ID: 23467006
    [Abstract] [Full Text] [Related]

  • 19. Structural assignment of disialylated biantennary N-glycan isomers derivatized with 2-aminopyridine using negative-ion multistage tandem mass spectral matching.
    Ito H, Yamada K, Deguchi K, Nakagawa H, Nishimura S.
    Rapid Commun Mass Spectrom; 2007 Jan 22; 21(2):212-8. PubMed ID: 17171781
    [Abstract] [Full Text] [Related]

  • 20. Enhanced glycan nanoprofiling by weak anion exchange preparative chromatography, mild acid desialylation, and nanoliquid chromatography-mass spectrometry with nanofluorescence detection.
    Kalay H, Ambrosini M, Chiodo F, van Kooyk Y, García-Vallejo JJ.
    Electrophoresis; 2013 Aug 22; 34(16):2350-6. PubMed ID: 23893432
    [Abstract] [Full Text] [Related]

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