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Journal Abstract Search

195 related items for PubMed ID: 23658709

  • 1. Protein complex detection via weighted ensemble clustering based on Bayesian nonnegative matrix factorization.
    Ou-Yang L, Dai DQ, Zhang XF.
    PLoS One; 2013; 8(5):e62158. PubMed ID: 23658709
    [Abstract] [Full Text] [Related]

  • 2. A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
    Ou-Yang L, Yan H, Zhang XF.
    BMC Bioinformatics; 2017 Dec 01; 18(Suppl 13):463. PubMed ID: 29219066
    [Abstract] [Full Text] [Related]

  • 3. MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.
    Srihari S, Ning K, Leong HW.
    BMC Bioinformatics; 2010 Oct 12; 11():504. PubMed ID: 20939868
    [Abstract] [Full Text] [Related]

  • 4. Joint clustering of protein interaction networks through Markov random walk.
    Wang Y, Qian X.
    BMC Syst Biol; 2014 Oct 12; 8 Suppl 1(Suppl 1):S9. PubMed ID: 24565376
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  • 5. Protein Complex Detection via Effective Integration of Base Clustering Solutions and Co-Complex Affinity Scores.
    Wu M, Ou-Yang L, Li XL.
    IEEE/ACM Trans Comput Biol Bioinform; 2017 Oct 12; 14(3):733-739. PubMed ID: 27071190
    [Abstract] [Full Text] [Related]

  • 6. Decision tree classifier based on topological characteristics of subgraph for the mining of protein complexes from large scale PPI networks.
    Sahoo TR, Patra S, Vipsita S.
    Comput Biol Chem; 2023 Oct 12; 106():107935. PubMed ID: 37536230
    [Abstract] [Full Text] [Related]

  • 7. Predicting protein complexes from weighted protein-protein interaction graphs with a novel unsupervised methodology: Evolutionary enhanced Markov clustering.
    Theofilatos K, Pavlopoulou N, Papasavvas C, Likothanassis S, Dimitrakopoulos C, Georgopoulos E, Moschopoulos C, Mavroudi S.
    Artif Intell Med; 2015 Mar 12; 63(3):181-9. PubMed ID: 25765008
    [Abstract] [Full Text] [Related]

  • 8. Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources.
    Taghipour S, Zarrineh P, Ganjtabesh M, Nowzari-Dalini A.
    BMC Bioinformatics; 2017 Jan 03; 18(1):10. PubMed ID: 28049415
    [Abstract] [Full Text] [Related]

  • 9. DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding.
    Meng X, Xiang J, Zheng R, Wu FX, Li M.
    IEEE/ACM Trans Comput Biol Bioinform; 2022 Jan 03; 19(3):1592-1602. PubMed ID: 33417563
    [Abstract] [Full Text] [Related]

  • 10. Discovering overlapped protein complexes from weighted PPI networks by removing inter-module hubs.
    Maddi AMA, Eslahchi C.
    Sci Rep; 2017 Jun 12; 7(1):3247. PubMed ID: 28607455
    [Abstract] [Full Text] [Related]

  • 11. A hybrid clustering algorithm for identifying modules in Protein-Protein Interaction networks.
    Yu L, Gao L, Sun PG.
    Int J Data Min Bioinform; 2010 Jun 12; 4(5):600-15. PubMed ID: 21133044
    [Abstract] [Full Text] [Related]

  • 12. Protein complex prediction via cost-based clustering.
    King AD, Przulj N, Jurisica I.
    Bioinformatics; 2004 Nov 22; 20(17):3013-20. PubMed ID: 15180928
    [Abstract] [Full Text] [Related]

  • 13. A new method for the discovery of essential proteins.
    Zhang X, Xu J, Xiao WX.
    PLoS One; 2013 Nov 22; 8(3):e58763. PubMed ID: 23555595
    [Abstract] [Full Text] [Related]

  • 14. Detecting temporal protein complexes from dynamic protein-protein interaction networks.
    Ou-Yang L, Dai DQ, Li XL, Wu M, Zhang XF, Yang P.
    BMC Bioinformatics; 2014 Oct 04; 15(1):335. PubMed ID: 25282536
    [Abstract] [Full Text] [Related]

  • 15. Detecting Protein Complexes Based on Uncertain Graph Model.
    Zhao B, Wang J, Li M, Wu FX, Pan Y.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Oct 04; 11(3):486-97. PubMed ID: 26356017
    [Abstract] [Full Text] [Related]

  • 16. A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification.
    Yu L, Gao L, Li K, Zhao Y, Chiu DK.
    Comput Biol Chem; 2011 Oct 12; 35(5):298-307. PubMed ID: 22000801
    [Abstract] [Full Text] [Related]

  • 17. Development and implementation of an algorithm for detection of protein complexes in large interaction networks.
    Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.
    BMC Bioinformatics; 2006 Apr 14; 7():207. PubMed ID: 16613608
    [Abstract] [Full Text] [Related]

  • 18. From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks.
    Xu B, Guan J.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Apr 14; 11(4):616-27. PubMed ID: 26356332
    [Abstract] [Full Text] [Related]

  • 19. A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity.
    Lei C, Ruan J.
    Bioinformatics; 2013 Feb 01; 29(3):355-64. PubMed ID: 23235927
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  • 20. Clustering and overlapping modules detection in PPI network based on IBFO.
    Lei X, Wu S, Ge L, Zhang A.
    Proteomics; 2013 Jan 01; 13(2):278-90. PubMed ID: 23229795
    [Abstract] [Full Text] [Related]

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