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Journal Abstract Search

181 related items for PubMed ID: 23887179

  • 1. Automated selected reaction monitoring data analysis workflow for large-scale targeted proteomic studies.
    Surinova S, Hüttenhain R, Chang CY, Espona L, Vitek O, Aebersold R.
    Nat Protoc; 2013 Aug; 8(8):1602-19. PubMed ID: 23887179
    [Abstract] [Full Text] [Related]

  • 2. ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.
    Brusniak MY, Kwok ST, Christiansen M, Campbell D, Reiter L, Picotti P, Kusebauch U, Ramos H, Deutsch EW, Chen J, Moritz RL, Aebersold R.
    BMC Bioinformatics; 2011 Mar 18; 12():78. PubMed ID: 21414234
    [Abstract] [Full Text] [Related]

  • 3. A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer.
    Hüttenhain R, Choi M, Martin de la Fuente L, Oehl K, Chang CY, Zimmermann AK, Malander S, Olsson H, Surinova S, Clough T, Heinzelmann-Schwarz V, Wild PJ, Dinulescu DM, Niméus E, Vitek O, Aebersold R.
    Mol Cell Proteomics; 2019 Sep 18; 18(9):1836-1850. PubMed ID: 31289117
    [Abstract] [Full Text] [Related]

  • 4. Protein significance analysis in selected reaction monitoring (SRM) measurements.
    Chang CY, Picotti P, Hüttenhain R, Heinzelmann-Schwarz V, Jovanovic M, Aebersold R, Vitek O.
    Mol Cell Proteomics; 2012 Apr 18; 11(4):M111.014662. PubMed ID: 22190732
    [Abstract] [Full Text] [Related]

  • 5. mProphet: automated data processing and statistical validation for large-scale SRM experiments.
    Reiter L, Rinner O, Picotti P, Hüttenhain R, Beck M, Brusniak MY, Hengartner MO, Aebersold R.
    Nat Methods; 2011 May 18; 8(5):430-5. PubMed ID: 21423193
    [Abstract] [Full Text] [Related]

  • 6. Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards.
    Gibbons BC, Fillmore TL, Gao Y, Moore RJ, Liu T, Nakayasu ES, Metz TO, Payne SH.
    J Proteome Res; 2019 Feb 01; 18(2):694-699. PubMed ID: 30525668
    [Abstract] [Full Text] [Related]

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  • 8. An automated proteomic data analysis workflow for mass spectrometry.
    Pendarvis K, Kumar R, Burgess SC, Nanduri B.
    BMC Bioinformatics; 2009 Oct 08; 10 Suppl 11(Suppl 11):S17. PubMed ID: 19811682
    [Abstract] [Full Text] [Related]

  • 9. In-depth proteomics of ovarian cancer ascites: combining shotgun proteomics and selected reaction monitoring mass spectrometry.
    Elschenbroich S, Ignatchenko V, Clarke B, Kalloger SE, Boutros PC, Gramolini AO, Shaw P, Jurisica I, Kislinger T.
    J Proteome Res; 2011 May 06; 10(5):2286-99. PubMed ID: 21491939
    [Abstract] [Full Text] [Related]

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  • 11. Highly Reproducible Automated Proteomics Sample Preparation Workflow for Quantitative Mass Spectrometry.
    Fu Q, Kowalski MP, Mastali M, Parker SJ, Sobhani K, van den Broek I, Hunter CL, Van Eyk JE.
    J Proteome Res; 2018 Jan 05; 17(1):420-428. PubMed ID: 29083196
    [Abstract] [Full Text] [Related]

  • 12. Ariadne's Thread: A Robust Software Solution Leading to Automated Absolute and Relative Quantification of SRM Data.
    Nasso S, Goetze S, Martens L.
    J Proteome Res; 2015 Sep 04; 14(9):3779-92. PubMed ID: 26123309
    [Abstract] [Full Text] [Related]

  • 13. Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development.
    Prakash A, Tomazela DM, Frewen B, Maclean B, Merrihew G, Peterman S, Maccoss MJ.
    J Proteome Res; 2009 Jun 04; 8(6):2733-9. PubMed ID: 19326923
    [Abstract] [Full Text] [Related]

  • 14. SRM/MRM targeted proteomics as a tool for biomarker validation and absolute quantification in human urine.
    Mermelekas G, Vlahou A, Zoidakis J.
    Expert Rev Mol Diagn; 2015 Jun 04; 15(11):1441-54. PubMed ID: 26472065
    [Abstract] [Full Text] [Related]

  • 15. High throughput and accurate serum proteome profiling by integrated sample preparation technology and single-run data independent mass spectrometry analysis.
    Lin L, Zheng J, Yu Q, Chen W, Xing J, Chen C, Tian R.
    J Proteomics; 2018 Mar 01; 174():9-16. PubMed ID: 29278786
    [Abstract] [Full Text] [Related]

  • 16. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
    von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD.
    Mol Cell Proteomics; 2003 Jul 01; 2(7):428-42. PubMed ID: 12832459
    [Abstract] [Full Text] [Related]

  • 17. Large-Scale SRM Screen of Urothelial Bladder Cancer Candidate Biomarkers in Urine.
    Duriez E, Masselon CD, Mesmin C, Court M, Demeure K, Allory Y, Malats N, Matondo M, Radvanyi F, Garin J, Domon B.
    J Proteome Res; 2017 Apr 07; 16(4):1617-1631. PubMed ID: 28287737
    [Abstract] [Full Text] [Related]

  • 18. PASSEL: the PeptideAtlas SRMexperiment library.
    Farrah T, Deutsch EW, Kreisberg R, Sun Z, Campbell DS, Mendoza L, Kusebauch U, Brusniak MY, Hüttenhain R, Schiess R, Selevsek N, Aebersold R, Moritz RL.
    Proteomics; 2012 Apr 07; 12(8):1170-5. PubMed ID: 22318887
    [Abstract] [Full Text] [Related]

  • 19. Absolute Quantitative Targeted Proteomics Assays for Plasma Proteins.
    Mohammed Y, Goodlett D, Borchers CH.
    Methods Mol Biol; 2023 Apr 07; 2628():439-473. PubMed ID: 36781801
    [Abstract] [Full Text] [Related]

  • 20. Mass spectrometric discovery and selective reaction monitoring (SRM) of putative protein biomarker candidates in first trimester Trisomy 21 maternal serum.
    Lopez MF, Kuppusamy R, Sarracino DA, Prakash A, Athanas M, Krastins B, Rezai T, Sutton JN, Peterman S, Nicolaides K.
    J Proteome Res; 2011 Jan 07; 10(1):133-42. PubMed ID: 20499897
    [Abstract] [Full Text] [Related]

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