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Journal Abstract Search


298 related items for PubMed ID: 23915736

  • 21. Characterization of an RNA receptor motif that recognizes a GCGA tetraloop.
    Furukawa A, Maejima T, Matsumura S, Ikawa Y.
    Biosci Biotechnol Biochem; 2016 Jul; 80(7):1386-9. PubMed ID: 26967268
    [Abstract] [Full Text] [Related]

  • 22. Evidence that folding of an RNA tetraloop hairpin is less cooperative than its DNA counterpart.
    Moody EM, Feerrar JC, Bevilacqua PC.
    Biochemistry; 2004 Jun 29; 43(25):7992-8. PubMed ID: 15209494
    [Abstract] [Full Text] [Related]

  • 23. Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements.
    Shin JH, Bonilla SL, Denny SK, Greenleaf WJ, Herschlag D.
    Proc Natl Acad Sci U S A; 2023 Mar 14; 120(11):e2220485120. PubMed ID: 36897989
    [Abstract] [Full Text] [Related]

  • 24. Structural variation and uniformity among tetraloop-receptor interactions and other loop-helix interactions in RNA crystal structures.
    Wu L, Chai D, Fraser ME, Zimmerly S.
    PLoS One; 2012 Mar 14; 7(11):e49225. PubMed ID: 23152878
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  • 25. The role of counterion valence and size in GAAA tetraloop-receptor docking/undocking kinetics.
    Fiore JL, Holmstrom ED, Fiegland LR, Hodak JH, Nesbitt DJ.
    J Mol Biol; 2012 Oct 19; 423(2):198-216. PubMed ID: 22796627
    [Abstract] [Full Text] [Related]

  • 26. Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches.
    Rüdisser S, Tinoco I.
    J Mol Biol; 2000 Feb 04; 295(5):1211-23. PubMed ID: 10653698
    [Abstract] [Full Text] [Related]

  • 27. Evidence of reciprocal tertiary interactions between conserved motifs involved in organizing RNA structure essential for internal initiation of translation.
    Fernández-Miragall O, Ramos R, Ramajo J, Martínez-Salas E.
    RNA; 2006 Feb 04; 12(2):223-34. PubMed ID: 16373480
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  • 28. The GANC tetraloop: a novel motif in the group IIC intron structure.
    Keating KS, Toor N, Pyle AM.
    J Mol Biol; 2008 Nov 14; 383(3):475-81. PubMed ID: 18773908
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  • 29. Enthalpy-driven RNA folding: single-molecule thermodynamics of tetraloop-receptor tertiary interaction.
    Fiore JL, Kraemer B, Koberling F, Edmann R, Nesbitt DJ.
    Biochemistry; 2009 Mar 24; 48(11):2550-8. PubMed ID: 19186984
    [Abstract] [Full Text] [Related]

  • 30. Site-directed spin labeling studies reveal solution conformational changes in a GAAA tetraloop receptor upon Mg(2+)-dependent docking of a GAAA tetraloop.
    Qin PZ, Feigon J, Hubbell WL.
    J Mol Biol; 2005 Aug 05; 351(1):1-8. PubMed ID: 15993422
    [Abstract] [Full Text] [Related]

  • 31. Thermodynamics and folding pathway of tetraloop receptor-mediated RNA helical packing.
    Vander Meulen KA, Davis JH, Foster TR, Record MT, Butcher SE.
    J Mol Biol; 2008 Dec 19; 384(3):702-17. PubMed ID: 18845162
    [Abstract] [Full Text] [Related]

  • 32. Identification and Characterization of New RNA Tetraloop Sequence Families.
    Richardson KE, Adams MS, Kirkpatrick CC, Gohara DW, Znosko BM.
    Biochemistry; 2019 Dec 03; 58(48):4809-4820. PubMed ID: 31714066
    [Abstract] [Full Text] [Related]

  • 33. Perturbation of the hierarchical folding of a large RNA by the destabilization of its Scaffold's tertiary structure.
    Shcherbakova I, Brenowitz M.
    J Mol Biol; 2005 Nov 25; 354(2):483-96. PubMed ID: 16242711
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  • 34. Portability of the GN(R)A hairpin loop motif between RNA and DNA.
    Blose JM, Lloyd KP, Bevilacqua PC.
    Biochemistry; 2009 Sep 22; 48(37):8787-94. PubMed ID: 19681609
    [Abstract] [Full Text] [Related]

  • 35. RNA tetraloop folding reveals tension between backbone restraints and molecular interactions.
    Mohan S, Hsiao C, Bowman JC, Wartell R, Williams LD.
    J Am Chem Soc; 2010 Sep 15; 132(36):12679-89. PubMed ID: 20726568
    [Abstract] [Full Text] [Related]

  • 36. Equilibrium conformational dynamics in an RNA tetraloop from massively parallel molecular dynamics.
    DePaul AJ, Thompson EJ, Patel SS, Haldeman K, Sorin EJ.
    Nucleic Acids Res; 2010 Aug 15; 38(14):4856-67. PubMed ID: 20223768
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  • 37. Identification of a GUAAY Pentaloop Sequence Involved in a Novel RNA Loop-Helix Interaction.
    Chan RT, Keating KS, Go MC, Toor N.
    J Mol Biol; 2016 Dec 04; 428(24 Pt B):4882-4889. PubMed ID: 27771480
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  • 38. Molecular dynamics simulations of the denaturation and refolding of an RNA tetraloop.
    Li W, Ma B, Shapiro B.
    J Biomol Struct Dyn; 2001 Dec 04; 19(3):381-96. PubMed ID: 11790138
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  • 39. Attenuation of loop-receptor interactions with pseudoknot formation.
    Afonin KA, Lin YP, Calkins ER, Jaeger L.
    Nucleic Acids Res; 2012 Mar 04; 40(5):2168-80. PubMed ID: 22080507
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  • 40. Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors.
    Blose JM, Proctor DJ, Veeraraghavan N, Misra VK, Bevilacqua PC.
    J Am Chem Soc; 2009 Jun 24; 131(24):8474-84. PubMed ID: 19476351
    [Abstract] [Full Text] [Related]


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