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Journal Abstract Search

1116 related items for PubMed ID: 23921808

  • 1. The CRAPome: a contaminant repository for affinity purification-mass spectrometry data.
    Mellacheruvu D, Wright Z, Couzens AL, Lambert JP, St-Denis NA, Li T, Miteva YV, Hauri S, Sardiu ME, Low TY, Halim VA, Bagshaw RD, Hubner NC, Al-Hakim A, Bouchard A, Faubert D, Fermin D, Dunham WH, Goudreault M, Lin ZY, Badillo BG, Pawson T, Durocher D, Coulombe B, Aebersold R, Superti-Furga G, Colinge J, Heck AJ, Choi H, Gstaiger M, Mohammed S, Cristea IM, Bennett KL, Washburn MP, Raught B, Ewing RM, Gingras AC, Nesvizhskii AI.
    Nat Methods; 2013 Aug; 10(8):730-6. PubMed ID: 23921808
    [Abstract] [Full Text] [Related]

  • 2. Identification and Quantification of Affinity-Purified Proteins with MaxQuant, Followed by the Discrimination of Nonspecific Interactions with the CRAPome Interface.
    Lee PY, Low TY.
    Methods Mol Biol; 2023 Aug; 2690():299-310. PubMed ID: 37450156
    [Abstract] [Full Text] [Related]

  • 3. Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions.
    Morris JH, Knudsen GM, Verschueren E, Johnson JR, Cimermancic P, Greninger AL, Pico AR.
    Nat Protoc; 2014 Nov; 9(11):2539-54. PubMed ID: 25275790
    [Abstract] [Full Text] [Related]

  • 4. Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry.
    Lee CM, Adamchek C, Feke A, Nusinow DA, Gendron JM.
    Methods Mol Biol; 2017 Nov; 1610():231-249. PubMed ID: 28439867
    [Abstract] [Full Text] [Related]

  • 5. ROCS: a reproducibility index and confidence score for interaction proteomics studies.
    Dazard JE, Saha S, Ewing RM.
    BMC Bioinformatics; 2012 Jun 08; 13():128. PubMed ID: 22682516
    [Abstract] [Full Text] [Related]

  • 6. Combined proximity labeling and affinity purification-mass spectrometry workflow for mapping and visualizing protein interaction networks.
    Liu X, Salokas K, Weldatsadik RG, Gawriyski L, Varjosalo M.
    Nat Protoc; 2020 Oct 08; 15(10):3182-3211. PubMed ID: 32778839
    [Abstract] [Full Text] [Related]

  • 7. Data Independent Acquisition analysis in ProHits 4.0.
    Liu G, Knight JD, Zhang JP, Tsou CC, Wang J, Lambert JP, Larsen B, Tyers M, Raught B, Bandeira N, Nesvizhskii AI, Choi H, Gingras AC.
    J Proteomics; 2016 Oct 21; 149():64-68. PubMed ID: 27132685
    [Abstract] [Full Text] [Related]

  • 8. Analyzing protein-protein interactions from affinity purification-mass spectrometry data with SAINT.
    Choi H, Liu G, Mellacheruvu D, Tyers M, Gingras AC, Nesvizhskii AI.
    Curr Protoc Bioinformatics; 2012 Sep 21; Chapter 8():8.15.1-8.15.23. PubMed ID: 22948729
    [Abstract] [Full Text] [Related]

  • 9. Parallel Exploration of Interaction Space by BioID and Affinity Purification Coupled to Mass Spectrometry.
    Hesketh GG, Youn JY, Samavarchi-Tehrani P, Raught B, Gingras AC.
    Methods Mol Biol; 2017 Sep 21; 1550():115-136. PubMed ID: 28188527
    [Abstract] [Full Text] [Related]

  • 10. Affinity-purification coupled to mass spectrometry: basic principles and strategies.
    Dunham WH, Mullin M, Gingras AC.
    Proteomics; 2012 May 21; 12(10):1576-90. PubMed ID: 22611051
    [Abstract] [Full Text] [Related]

  • 11. SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments.
    Choi H, Glatter T, Gstaiger M, Nesvizhskii AI.
    J Proteome Res; 2012 Apr 06; 11(4):2619-24. PubMed ID: 22352807
    [Abstract] [Full Text] [Related]

  • 12. Identifying novel protein complexes in cancer cells using epitope-tagging of endogenous human genes and affinity-purification mass spectrometry.
    Song J, Hao Y, Du Z, Wang Z, Ewing RM.
    J Proteome Res; 2012 Dec 07; 11(12):5630-41. PubMed ID: 23106643
    [Abstract] [Full Text] [Related]

  • 13. Analyzing Protein Interactions by MAC-Tag Approaches.
    Liu X, Salokas K, Keskitalo S, Martínez-Botía P, Varjosalo M.
    Methods Mol Biol; 2023 Dec 07; 2690():281-297. PubMed ID: 37450155
    [Abstract] [Full Text] [Related]

  • 14. CIG-P: Circular Interaction Graph for Proteomics.
    Hobbs CK, Leung M, Tsang HH, Ebhardt HA.
    BMC Bioinformatics; 2014 Oct 31; 15(1):344. PubMed ID: 25359149
    [Abstract] [Full Text] [Related]

  • 15. Resolving protein interactions and complexes by affinity purification followed by label-based quantitative mass spectrometry.
    Trinkle-Mulcahy L.
    Proteomics; 2012 May 31; 12(10):1623-38. PubMed ID: 22610586
    [Abstract] [Full Text] [Related]

  • 16. Considerations for Identifying Endogenous Protein Complexes from Tissue via Immunoaffinity Purification and Quantitative Mass Spectrometry.
    Federspiel JD, Cristea IM.
    Methods Mol Biol; 2019 May 31; 1977():115-143. PubMed ID: 30980326
    [Abstract] [Full Text] [Related]

  • 17. SAINT: probabilistic scoring of affinity purification-mass spectrometry data.
    Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI.
    Nat Methods; 2011 Jan 31; 8(1):70-3. PubMed ID: 21131968
    [Abstract] [Full Text] [Related]

  • 18. Protocol for affinity purification-mass spectrometry interactome profiling in larvae of Drosophila melanogaster.
    Guo Y, Hartson SD, Rogers J, Brooks-Kanost L, Brooks D, Geisbrecht ER.
    STAR Protoc; 2024 Jun 21; 5(2):103064. PubMed ID: 38743568
    [Abstract] [Full Text] [Related]

  • 19. Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments.
    Nesvizhskii AI.
    Proteomics; 2012 May 21; 12(10):1639-55. PubMed ID: 22611043
    [Abstract] [Full Text] [Related]

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