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Journal Abstract Search

212 related items for PubMed ID: 23954099

  • 1. Ligand docking simulations by generalized-ensemble algorithms.
    Okamoto Y, Kokubo H, Tanaka T.
    Adv Protein Chem Struct Biol; 2013; 92():63-91. PubMed ID: 23954099
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  • 2. Protein folding simulations by generalized-ensemble algorithms.
    Yoda T, Sugita Y, Okamoto Y.
    Adv Exp Med Biol; 2014; 805():1-27. PubMed ID: 24446355
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  • 5. Enhanced sampling algorithms.
    Mitsutake A, Mori Y, Okamoto Y.
    Methods Mol Biol; 2013; 924():153-95. PubMed ID: 23034749
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  • 8. All-Atom Molecular Dynamics Simulation Methods for the Aggregation of Protein and Peptides: Replica Exchange/Permutation and Nonequilibrium Simulations.
    Itoh SG, Okumura H.
    Methods Mol Biol; 2022; 2340():197-220. PubMed ID: 35167076
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  • 9. Multidimensional generalized-ensemble algorithms for complex systems.
    Mitsutake A, Okamoto Y.
    J Chem Phys; 2009 Jun 07; 130(21):214105. PubMed ID: 19508054
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  • 13. Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms.
    Mori T, Miyashita N, Im W, Feig M, Sugita Y.
    Biochim Biophys Acta; 2016 Jul 07; 1858(7 Pt B):1635-51. PubMed ID: 26766517
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  • 14. Monte Carlo simulations in generalized isobaric-isothermal ensembles.
    Okumura H, Okamoto Y.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2004 Aug 07; 70(2 Pt 2):026702. PubMed ID: 15447615
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  • 16. Determination of the structural ensemble of the molten globule state of a protein by computer simulations.
    Shimizu M, Kajikawa Y, Kuwajima K, Dobson CM, Okamoto Y.
    Proteins; 2019 Aug 07; 87(8):635-645. PubMed ID: 30958596
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