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Journal Abstract Search

212 related items for PubMed ID: 23954099

  • 21.
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  • 22. Monte Carlo replica-exchange based ensemble docking of protein conformations.
    Zhang Z, Ehmann U, Zacharias M.
    Proteins; 2017 May; 85(5):924-937. PubMed ID: 28168752
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  • 25. Dissociation aided and side chain sampling enhanced Hamiltonian replica exchange.
    Mu Y.
    J Chem Phys; 2009 Apr 28; 130(16):164107. PubMed ID: 19405561
    [Abstract] [Full Text] [Related]

  • 26. Exploring the solid-liquid phase change of an adapted Dzugutov model using generalized replica exchange method.
    Lu Q, Kim J, Straub JE.
    J Phys Chem B; 2012 Jul 26; 116(29):8654-61. PubMed ID: 22452532
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  • 29. Serial Generalized Ensemble Simulations of Biomolecules with Self-Consistent Determination of Weights.
    Chelli R, Signorini GF.
    J Chem Theory Comput; 2012 Mar 13; 8(3):830-42. PubMed ID: 26593345
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  • 32. Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins.
    Pitera JW, Swope W.
    Proc Natl Acad Sci U S A; 2003 Jun 24; 100(13):7587-92. PubMed ID: 12808142
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  • 34. Replica exchange statistical temperature molecular dynamics algorithm.
    Kim J, Straub JE, Keyes T.
    J Phys Chem B; 2012 Jul 26; 116(29):8646-53. PubMed ID: 22540354
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  • 36. Improving the replica-exchange molecular-dynamics method for efficient sampling in the temperature space.
    Chen C, Xiao Y, Huang Y.
    Phys Rev E Stat Nonlin Soft Matter Phys; 2015 May 26; 91(5):052708. PubMed ID: 26066200
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  • 38. Dynamic ligand-induced-fit simulation via enhanced conformational samplings and ensemble dockings: a survivin example.
    Park IH, Li C.
    J Phys Chem B; 2010 Apr 22; 114(15):5144-53. PubMed ID: 20337446
    [Abstract] [Full Text] [Related]

  • 39. Influence of various parameters in the replica-exchange molecular dynamics method: Number of replicas, replica-exchange frequency, and thermostat coupling time constant.
    Iwai R, Kasahara K, Takahashi T.
    Biophys Physicobiol; 2018 Apr 22; 15():165-172. PubMed ID: 30250775
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