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353 related items for PubMed ID: 24091392

  • 1. Accuracy guarantees for phylogeny reconstruction algorithms based on balanced minimum evolution.
    Bordewich M, Mihaescu R.
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(3):576-83. PubMed ID: 24091392
    [Abstract] [Full Text] [Related]

  • 2.
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  • 3. Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference.
    Bordewich M, Gascuel O, Huber KT, Moulton V.
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(1):110-7. PubMed ID: 19179704
    [Abstract] [Full Text] [Related]

  • 4. Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting.
    Desper R, Gascuel O.
    Mol Biol Evol; 2004 Mar; 21(3):587-98. PubMed ID: 14694080
    [Abstract] [Full Text] [Related]

  • 5. Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle.
    Desper R, Gascuel O.
    J Comput Biol; 2002 Mar; 9(5):687-705. PubMed ID: 12487758
    [Abstract] [Full Text] [Related]

  • 6. Fast computation of distance estimators.
    Elias I, Lagergren J.
    BMC Bioinformatics; 2007 Mar 13; 8():89. PubMed ID: 17355623
    [Abstract] [Full Text] [Related]

  • 7. Clearcut: a fast implementation of relaxed neighbor joining.
    Sheneman L, Evans J, Foster JA.
    Bioinformatics; 2006 Nov 15; 22(22):2823-4. PubMed ID: 16982706
    [Abstract] [Full Text] [Related]

  • 8. Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method.
    Evans J, Sheneman L, Foster J.
    J Mol Evol; 2006 Jun 15; 62(6):785-92. PubMed ID: 16752216
    [Abstract] [Full Text] [Related]

  • 9. Getting a tree fast: Neighbor Joining, FastME, and distance-based methods.
    Desper R, Gascuel O.
    Curr Protoc Bioinformatics; 2006 Oct 15; Chapter 6():Unit 6.3. PubMed ID: 18428768
    [Abstract] [Full Text] [Related]

  • 10. FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program.
    Lefort V, Desper R, Gascuel O.
    Mol Biol Evol; 2015 Oct 15; 32(10):2798-800. PubMed ID: 26130081
    [Abstract] [Full Text] [Related]

  • 11. Distance-Based Phylogenetic Methods Around a Polytomy.
    Davidson R, Sullivant S.
    IEEE/ACM Trans Comput Biol Bioinform; 2014 Oct 15; 11(2):325-35. PubMed ID: 26355780
    [Abstract] [Full Text] [Related]

  • 12. A multi-neighbor-joining approach for phylogenetic tree reconstruction and visualization.
    Silva AE, Villanueva WJ, Knidel H, Bonato VC, Reis SF, Von Zuben FJ.
    Genet Mol Res; 2005 Sep 30; 4(3):525-34. PubMed ID: 16342037
    [Abstract] [Full Text] [Related]

  • 13. Maximum similarity: a new formulation of phylogenetic reconstruction.
    Huang X, Vingron M.
    J Comput Biol; 2009 Jul 30; 16(7):887-96. PubMed ID: 19580518
    [Abstract] [Full Text] [Related]

  • 14. A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences.
    Lacey MR, Chang JT.
    Math Biosci; 2006 Feb 30; 199(2):188-215. PubMed ID: 16412478
    [Abstract] [Full Text] [Related]

  • 15. Optimality of the neighbor joining algorithm and faces of the balanced minimum evolution polytope.
    Haws DC, Hodge TL, Yoshida R.
    Bull Math Biol; 2011 Nov 30; 73(11):2627-48. PubMed ID: 21373975
    [Abstract] [Full Text] [Related]

  • 16. Neighbor joining algorithms for inferring phylogenies via LCA distances.
    Gronau I, Moran S.
    J Comput Biol; 2007 Nov 30; 14(1):1-15. PubMed ID: 17381342
    [Abstract] [Full Text] [Related]

  • 17. Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction.
    Hollich V, Milchert L, Arvestad L, Sonnhammer EL.
    Mol Biol Evol; 2005 Nov 30; 22(11):2257-64. PubMed ID: 16049194
    [Abstract] [Full Text] [Related]

  • 18. A rapid heuristic algorithm for finding minimum evolution trees.
    Rodin A, Li WH.
    Mol Phylogenet Evol; 2000 Aug 30; 16(2):173-9. PubMed ID: 10942605
    [Abstract] [Full Text] [Related]

  • 19. Combinatorics of distance-based tree inference.
    Pardi F, Gascuel O.
    Proc Natl Acad Sci U S A; 2012 Oct 09; 109(41):16443-8. PubMed ID: 23012403
    [Abstract] [Full Text] [Related]

  • 20. Phylogeny inference based on spectral graph clustering.
    Zhang SB, Zhou SY, He JG, Lai JH.
    J Comput Biol; 2011 Apr 09; 18(4):627-37. PubMed ID: 21352066
    [Abstract] [Full Text] [Related]

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