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Journal Abstract Search

249 related items for PubMed ID: 24093595

  • 1. A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis.
    Tucker G, Loh PR, Berger B.
    BMC Bioinformatics; 2013 Oct 04; 14():299. PubMed ID: 24093595
    [Abstract] [Full Text] [Related]

  • 2. Computational detection of protein complexes in AP-MS experiments.
    Choi H.
    Proteomics; 2012 May 04; 12(10):1663-8. PubMed ID: 22711593
    [Abstract] [Full Text] [Related]

  • 3. A novel scoring approach for protein co-purification data reveals high interaction specificity.
    Yu X, Ivanic J, Wallqvist A, Reifman J.
    PLoS Comput Biol; 2009 Sep 04; 5(9):e1000515. PubMed ID: 19779545
    [Abstract] [Full Text] [Related]

  • 4. Reinforce: An Ensemble Approach for Inferring PPI Network from AP-MS Data.
    Tian B, Duan Q, Zhao C, Teng B, He Z.
    IEEE/ACM Trans Comput Biol Bioinform; 2019 Sep 04; 16(2):365-376. PubMed ID: 28534782
    [Abstract] [Full Text] [Related]

  • 5. Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments.
    Nesvizhskii AI.
    Proteomics; 2012 May 04; 12(10):1639-55. PubMed ID: 22611043
    [Abstract] [Full Text] [Related]

  • 6. A two-step framework for inferring direct protein-protein interaction network from AP-MS data.
    Tian B, Zhao C, Gu F, He Z.
    BMC Syst Biol; 2017 Sep 21; 11(Suppl 4):82. PubMed ID: 28950876
    [Abstract] [Full Text] [Related]

  • 7. Identifying binary protein-protein interactions from affinity purification mass spectrometry data.
    Zhang XF, Ou-Yang L, Hu X, Dai DQ.
    BMC Genomics; 2015 Oct 05; 16():745. PubMed ID: 26438428
    [Abstract] [Full Text] [Related]

  • 8. ROCS: a reproducibility index and confidence score for interaction proteomics studies.
    Dazard JE, Saha S, Ewing RM.
    BMC Bioinformatics; 2012 Jun 08; 13():128. PubMed ID: 22682516
    [Abstract] [Full Text] [Related]

  • 9. Detection of protein complexes from affinity purification/mass spectrometry data.
    Cai B, Wang H, Zheng H, Wang H.
    BMC Syst Biol; 2012 Jun 08; 6 Suppl 3(Suppl 3):S4. PubMed ID: 23282282
    [Abstract] [Full Text] [Related]

  • 10. Computational framework for analysis of prey-prey associations in interaction proteomics identifies novel human protein-protein interactions and networks.
    Saha S, Dazard JE, Xu H, Ewing RM.
    J Proteome Res; 2012 Sep 07; 11(9):4476-87. PubMed ID: 22845868
    [Abstract] [Full Text] [Related]

  • 11. SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments.
    Choi H, Glatter T, Gstaiger M, Nesvizhskii AI.
    J Proteome Res; 2012 Apr 06; 11(4):2619-24. PubMed ID: 22352807
    [Abstract] [Full Text] [Related]

  • 12. SAINT: probabilistic scoring of affinity purification-mass spectrometry data.
    Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI.
    Nat Methods; 2011 Jan 06; 8(1):70-3. PubMed ID: 21131968
    [Abstract] [Full Text] [Related]

  • 13. Pre- and post-processing workflow for affinity purification mass spectrometry data.
    Fischer M, Zilkenat S, Gerlach RG, Wagner S, Renard BY.
    J Proteome Res; 2014 May 02; 13(5):2239-49. PubMed ID: 24641689
    [Abstract] [Full Text] [Related]

  • 14. Beyond hairballs: The use of quantitative mass spectrometry data to understand protein-protein interactions.
    Gingras AC, Raught B.
    FEBS Lett; 2012 Aug 14; 586(17):2723-31. PubMed ID: 22710165
    [Abstract] [Full Text] [Related]

  • 15. Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments.
    Armean IM, Lilley KS, Trotter MW.
    Mol Cell Proteomics; 2013 Jan 14; 12(1):1-13. PubMed ID: 23071097
    [Abstract] [Full Text] [Related]

  • 16. Affinity-purification coupled to mass spectrometry: basic principles and strategies.
    Dunham WH, Mullin M, Gingras AC.
    Proteomics; 2012 May 14; 12(10):1576-90. PubMed ID: 22611051
    [Abstract] [Full Text] [Related]

  • 17. Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data.
    Choi H, Kim S, Gingras AC, Nesvizhskii AI.
    Mol Syst Biol; 2010 Jun 22; 6():385. PubMed ID: 20571534
    [Abstract] [Full Text] [Related]

  • 18. Parallel Exploration of Interaction Space by BioID and Affinity Purification Coupled to Mass Spectrometry.
    Hesketh GG, Youn JY, Samavarchi-Tehrani P, Raught B, Gingras AC.
    Methods Mol Biol; 2017 Jun 22; 1550():115-136. PubMed ID: 28188527
    [Abstract] [Full Text] [Related]

  • 19. Network inference from AP-MS data: computational challenges and solutions.
    Teng B, Zhao C, Liu X, He Z.
    Brief Bioinform; 2015 Jul 22; 16(4):658-74. PubMed ID: 25378435
    [Abstract] [Full Text] [Related]

  • 20. Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry.
    Lee CM, Adamchek C, Feke A, Nusinow DA, Gendron JM.
    Methods Mol Biol; 2017 Jul 22; 1610():231-249. PubMed ID: 28439867
    [Abstract] [Full Text] [Related]

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