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197 related items for PubMed ID: 24104350

  • 1. Control of ribosome traffic by position-dependent choice of synonymous codons.
    Mitarai N, Pedersen S.
    Phys Biol; 2013 Oct; 10(5):056011. PubMed ID: 24104350
    [Abstract] [Full Text] [Related]

  • 2. Ribosome collisions and translation efficiency: optimization by codon usage and mRNA destabilization.
    Mitarai N, Sneppen K, Pedersen S.
    J Mol Biol; 2008 Sep 26; 382(1):236-45. PubMed ID: 18619977
    [Abstract] [Full Text] [Related]

  • 3. Clustering of low usage codons and ribosome movement.
    Zhang S, Goldman E, Zubay G.
    J Theor Biol; 1994 Oct 21; 170(4):339-54. PubMed ID: 7996861
    [Abstract] [Full Text] [Related]

  • 4. A role for codon order in translation dynamics.
    Cannarozzi G, Schraudolph NN, Faty M, von Rohr P, Friberg MT, Roth AC, Gonnet P, Gonnet G, Barral Y.
    Cell; 2010 Apr 16; 141(2):355-67. PubMed ID: 20403329
    [Abstract] [Full Text] [Related]

  • 5. Ribosome-mediated translational pause and protein domain organization.
    Thanaraj TA, Argos P.
    Protein Sci; 1996 Aug 16; 5(8):1594-612. PubMed ID: 8844849
    [Abstract] [Full Text] [Related]

  • 6. Isolation of ribosome bound nascent polypeptides in vitro to identify translational pause sites along mRNA.
    Jha SS, Komar AA.
    J Vis Exp; 2012 Jul 06; (65):. PubMed ID: 22806127
    [Abstract] [Full Text] [Related]

  • 7. Ribosome traffic in E. coli and regulation of gene expression.
    Lesnik T, Solomovici J, Deana A, Ehrlich R, Reiss C.
    J Theor Biol; 2000 Jan 21; 202(2):175-85. PubMed ID: 10640436
    [Abstract] [Full Text] [Related]

  • 8. Rare codons play a positive role in the expression of the stationary phase sigma factor RpoS (σ(S)) in Escherichia coli.
    Kolmsee T, Hengge R.
    RNA Biol; 2011 Jan 21; 8(5):913-21. PubMed ID: 21788735
    [Abstract] [Full Text] [Related]

  • 9. [Stability of messenger RNA of Escherichia coli ompA is affected by the use of synonymous codon].
    Deana A, Reiss C.
    C R Acad Sci III; 1993 Jul 21; 316(7):628-32. PubMed ID: 8019884
    [Abstract] [Full Text] [Related]

  • 10. Translation elongation can control translation initiation on eukaryotic mRNAs.
    Chu D, Kazana E, Bellanger N, Singh T, Tuite MF, von der Haar T.
    EMBO J; 2014 Jan 07; 33(1):21-34. PubMed ID: 24357599
    [Abstract] [Full Text] [Related]

  • 11. What makes ribosome-mediated transcriptional attenuation sensitive to amino acid limitation?
    Elf J, Ehrenberg M.
    PLoS Comput Biol; 2005 Jun 07; 1(1):e2. PubMed ID: 16103903
    [Abstract] [Full Text] [Related]

  • 12. The extent of ribosome queuing in budding yeast.
    Diament A, Feldman A, Schochet E, Kupiec M, Arava Y, Tuller T.
    PLoS Comput Biol; 2018 Jan 07; 14(1):e1005951. PubMed ID: 29377894
    [Abstract] [Full Text] [Related]

  • 13. The functional half-life of an mRNA depends on the ribosome spacing in an early coding region.
    Pedersen M, Nissen S, Mitarai N, Lo Svenningsen S, Sneppen K, Pedersen S.
    J Mol Biol; 2011 Mar 18; 407(1):35-44. PubMed ID: 21255584
    [Abstract] [Full Text] [Related]

  • 14. The effects of codon context on in vivo translation speed.
    Chevance FF, Le Guyon S, Hughes KT.
    PLoS Genet; 2014 Jun 18; 10(6):e1004392. PubMed ID: 24901308
    [Abstract] [Full Text] [Related]

  • 15. Protein tagging at rare codons is caused by tmRNA action at the 3' end of nonstop mRNA generated in response to ribosome stalling.
    Li X, Hirano R, Tagami H, Aiba H.
    RNA; 2006 Feb 18; 12(2):248-55. PubMed ID: 16373482
    [Abstract] [Full Text] [Related]

  • 16. [Sense codon in Escherichia coli are translated in context].
    Shpaer EG.
    Mol Biol (Mosk); 1986 Feb 18; 20(5):1299-304. PubMed ID: 3534548
    [Abstract] [Full Text] [Related]

  • 17. Widespread position-specific conservation of synonymous rare codons within coding sequences.
    Chaney JL, Steele A, Carmichael R, Rodriguez A, Specht AT, Ngo K, Li J, Emrich S, Clark PL.
    PLoS Comput Biol; 2017 May 18; 13(5):e1005531. PubMed ID: 28475588
    [Abstract] [Full Text] [Related]

  • 18. Translation efficiencies of synonymous codons are not always correlated with codon usage in tobacco chloroplasts.
    Nakamura M, Sugiura M.
    Plant J; 2007 Jan 18; 49(1):128-34. PubMed ID: 17144890
    [Abstract] [Full Text] [Related]

  • 19. Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo.
    Nakahigashi K, Takai Y, Shiwa Y, Wada M, Honma M, Yoshikawa H, Tomita M, Kanai A, Mori H.
    BMC Genomics; 2014 Dec 16; 15(1):1115. PubMed ID: 25512115
    [Abstract] [Full Text] [Related]

  • 20. Analysis of computational codon usage models and their association with translationally slow codons.
    Wright G, Rodriguez A, Li J, Clark PL, Milenković T, Emrich SJ.
    PLoS One; 2020 Dec 16; 15(4):e0232003. PubMed ID: 32352987
    [Abstract] [Full Text] [Related]

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