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476 related items for PubMed ID: 24123156

  • 1. Protein docking using case-based reasoning.
    Ghoorah AW, Devignes MD, Smaïl-Tabbone M, Ritchie DW.
    Proteins; 2013 Dec; 81(12):2150-8. PubMed ID: 24123156
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  • 2. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R, Leplae R, Lensink MF, Wodak SJ.
    Proteins; 2005 Aug 01; 60(2):150-69. PubMed ID: 15981261
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  • 3. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y, Wen Z, Wang X, Huang SY.
    Proteins; 2017 Mar 01; 85(3):497-512. PubMed ID: 28026062
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  • 4. Spatial clustering of protein binding sites for template based protein docking.
    Ghoorah AW, Devignes MD, Smaïl-Tabbone M, Ritchie DW.
    Bioinformatics; 2011 Oct 15; 27(20):2820-7. PubMed ID: 21873637
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  • 5. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y, Douguet D, Tovchigrechko A, Vakser IA.
    Proteins; 2007 Dec 01; 69(4):845-51. PubMed ID: 17803215
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  • 6. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
    Pallara C, Jiménez-García B, Romero M, Moal IH, Fernández-Recio J.
    Proteins; 2017 Mar 01; 85(3):487-496. PubMed ID: 27701776
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  • 8. Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI.
    Schindler CE, Chauvot de Beauchêne I, de Vries SJ, Zacharias M.
    Proteins; 2017 Mar 01; 85(3):391-398. PubMed ID: 27785830
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  • 12. Defining the limits of homology modeling in information-driven protein docking.
    Rodrigues JP, Melquiond AS, Karaca E, Trellet M, van Dijk M, van Zundert GC, Schmitz C, de Vries SJ, Bordogna A, Bonati L, Kastritis PL, Bonvin AM.
    Proteins; 2013 Dec 01; 81(12):2119-28. PubMed ID: 23913867
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  • 13. Docking and scoring protein interactions: CAPRI 2009.
    Lensink MF, Wodak SJ.
    Proteins; 2010 Nov 15; 78(15):3073-84. PubMed ID: 20806235
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  • 14. Classification and Exploration of 3D Protein Domain Interactions Using Kbdock.
    Ghoorah AW, Devignes MD, Smaïl-Tabbone M, Ritchie DW.
    Methods Mol Biol; 2016 Nov 15; 1415():91-105. PubMed ID: 27115629
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  • 15. What method to use for protein-protein docking?
    Porter KA, Desta I, Kozakov D, Vajda S.
    Curr Opin Struct Biol; 2019 Apr 15; 55():1-7. PubMed ID: 30711743
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  • 18. Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions.
    Peterson LX, Shin WH, Kim H, Kihara D.
    Proteins; 2018 Mar 15; 86 Suppl 1(Suppl 1):311-320. PubMed ID: 28845596
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  • 19. Docking without docking: ISEARCH--prediction of interactions using known interfaces.
    Günther S, May P, Hoppe A, Frömmel C, Preissner R.
    Proteins; 2007 Dec 01; 69(4):839-44. PubMed ID: 17803236
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  • 20. RosettaDock in CAPRI rounds 6-12.
    Wang C, Schueler-Furman O, Andre I, London N, Fleishman SJ, Bradley P, Qian B, Baker D.
    Proteins; 2007 Dec 01; 69(4):758-63. PubMed ID: 17671979
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