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Journal Abstract Search

237 related items for PubMed ID: 24373374

  • 1. TIPMaP: a web server to establish transcript isoform profiles from reliable microarray probes.
    Chitturi N, Balagannavar G, Chandrashekar DS, Abinaya S, Srini VS, Acharya KK.
    BMC Genomics; 2013 Dec 27; 14():922. PubMed ID: 24373374
    [Abstract] [Full Text] [Related]

  • 2. AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
    Liu H, Zeeberg BR, Qu G, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN.
    Bioinformatics; 2007 Sep 15; 23(18):2385-90. PubMed ID: 17660211
    [Abstract] [Full Text] [Related]

  • 3. Transcript-specific expression profiles derived from sequence-based analysis of standard microarrays.
    Moll AG, Lindenmeyer MT, Kretzler M, Nelson PJ, Zimmer R, Cohen CD.
    PLoS One; 2009 Sep 15; 4(3):e4702. PubMed ID: 19277110
    [Abstract] [Full Text] [Related]

  • 4. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.
    BMC Genomics; 2008 Nov 07; 9():529. PubMed ID: 18990248
    [Abstract] [Full Text] [Related]

  • 5. The Medicago truncatula gene expression atlas web server.
    He J, Benedito VA, Wang M, Murray JD, Zhao PX, Tang Y, Udvardi MK.
    BMC Bioinformatics; 2009 Dec 22; 10():441. PubMed ID: 20028527
    [Abstract] [Full Text] [Related]

  • 6. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
    Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S17. PubMed ID: 17430561
    [Abstract] [Full Text] [Related]

  • 7. Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.
    Ha KCh, Coulombe-Huntington J, Majewski J.
    BMC Genomics; 2009 Nov 12; 10():519. PubMed ID: 19909511
    [Abstract] [Full Text] [Related]

  • 8. Exon Array Analyzer: a web interface for Affymetrix exon array analysis.
    Gellert P, Uchida S, Braun T.
    Bioinformatics; 2009 Dec 15; 25(24):3323-4. PubMed ID: 19808879
    [Abstract] [Full Text] [Related]

  • 9. GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.
    Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.
    BMC Bioinformatics; 2010 Apr 29; 11():221. PubMed ID: 20429936
    [Abstract] [Full Text] [Related]

  • 10. The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface.
    Chen J, Zhao P, Massaro D, Clerch LB, Almon RR, DuBois DC, Jusko WJ, Hoffman EP.
    Nucleic Acids Res; 2004 Jan 01; 32(Database issue):D578-81. PubMed ID: 14681485
    [Abstract] [Full Text] [Related]

  • 11. Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.
    Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.
    BMC Bioinformatics; 2005 Apr 25; 6():107. PubMed ID: 15850491
    [Abstract] [Full Text] [Related]

  • 12. A web based resource characterizing the zebrafish developmental profile of over 16,000 transcripts.
    Ouyang M, Garnett AT, Han TM, Hama K, Lee A, Deng Y, Lee N, Liu HY, Amacher SL, Farber SA, Ho SY.
    Gene Expr Patterns; 2008 Feb 25; 8(3):171-80. PubMed ID: 18068546
    [Abstract] [Full Text] [Related]

  • 13. A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.
    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.
    Theor Biol Med Model; 2006 Apr 07; 3():19. PubMed ID: 16603076
    [Abstract] [Full Text] [Related]

  • 14. Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data.
    Yin J, McLoughlin S, Jeffery IB, Glaviano A, Kennedy B, Higgins DG.
    BMC Genomics; 2010 Jan 20; 11():50. PubMed ID: 20089164
    [Abstract] [Full Text] [Related]

  • 15. High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity.
    Zhou W, Calciano MA, Jordan H, Brenner M, Johnson S, Wu D, Lei L, Pallares D, Beurdeley P, Rouet F, Gill PS, Bracco L, Soucaille C, Einstein R.
    BMC Genet; 2009 Oct 05; 10():63. PubMed ID: 19804644
    [Abstract] [Full Text] [Related]

  • 16. Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.
    Jaksik R, Polańska J, Herok R, Rzeszowska-Wolny J.
    Acta Biochim Pol; 2009 Oct 05; 56(2):271-7. PubMed ID: 19436837
    [Abstract] [Full Text] [Related]

  • 17. A unique, consistent identifier for alternatively spliced transcript variants.
    Riva A, Pesole G.
    PLoS One; 2009 Oct 28; 4(10):e7631. PubMed ID: 19865484
    [Abstract] [Full Text] [Related]

  • 18. Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.
    Guzzi PH, Cannataro M.
    Comput Methods Programs Biomed; 2013 Aug 28; 111(2):402-9. PubMed ID: 23731720
    [Abstract] [Full Text] [Related]

  • 19. STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data.
    Jupiter D, Chen H, VanBuren V.
    BMC Bioinformatics; 2009 Oct 14; 10():332. PubMed ID: 19828039
    [Abstract] [Full Text] [Related]

  • 20. Implementation of exon arrays: alternative splicing during T-cell proliferation as determined by whole genome analysis.
    Whistler T, Chiang CF, Lonergan W, Hollier M, Unger ER.
    BMC Genomics; 2010 Sep 14; 11():496. PubMed ID: 20840771
    [Abstract] [Full Text] [Related]

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