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Journal Abstract Search

229 related items for PubMed ID: 24475173

  • 1. Non-redundant unique interface structures as templates for modeling protein interactions.
    Cukuroglu E, Gursoy A, Nussinov R, Keskin O.
    PLoS One; 2014; 9(1):e86738. PubMed ID: 24475173
    [Abstract] [Full Text] [Related]

  • 2. PRISM: protein-protein interaction prediction by structural matching.
    Keskin O, Nussinov R, Gursoy A.
    Methods Mol Biol; 2008; 484():505-21. PubMed ID: 18592198
    [Abstract] [Full Text] [Related]

  • 3. PRISM: protein interactions by structural matching.
    Ogmen U, Keskin O, Aytuna AS, Nussinov R, Gursoy A.
    Nucleic Acids Res; 2005 Jul 01; 33(Web Server issue):W331-6. PubMed ID: 15991339
    [Abstract] [Full Text] [Related]

  • 4. PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.
    Baspinar A, Cukuroglu E, Nussinov R, Keskin O, Gursoy A.
    Nucleic Acids Res; 2014 Jul 01; 42(Web Server issue):W285-9. PubMed ID: 24829450
    [Abstract] [Full Text] [Related]

  • 5. Structural templates for comparative protein docking.
    Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA.
    Proteins; 2015 Sep 01; 83(9):1563-70. PubMed ID: 25488330
    [Abstract] [Full Text] [Related]

  • 6. Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.
    Bordner AJ, Gorin AA.
    BMC Bioinformatics; 2008 May 12; 9():234. PubMed ID: 18474114
    [Abstract] [Full Text] [Related]

  • 7. HotRegion: a database of predicted hot spot clusters.
    Cukuroglu E, Gursoy A, Keskin O.
    Nucleic Acids Res; 2012 Jan 12; 40(Database issue):D829-33. PubMed ID: 22080558
    [Abstract] [Full Text] [Related]

  • 8. Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM.
    Tuncbag N, Gursoy A, Nussinov R, Keskin O.
    Nat Protoc; 2011 Aug 11; 6(9):1341-54. PubMed ID: 21886100
    [Abstract] [Full Text] [Related]

  • 9. Oligomeric protein structure networks: insights into protein-protein interactions.
    Brinda KV, Vishveshwara S.
    BMC Bioinformatics; 2005 Dec 10; 6():296. PubMed ID: 16336694
    [Abstract] [Full Text] [Related]

  • 10. PPInterface: A Comprehensive Dataset of 3D Protein-Protein Interface Structures.
    Abali Z, Aydin Z, Khokhar M, Ates YC, Gursoy A, Keskin O.
    J Mol Biol; 2024 Sep 01; 436(17):168686. PubMed ID: 38936693
    [Abstract] [Full Text] [Related]

  • 11. Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement.
    Tuncbag N, Keskin O, Nussinov R, Gursoy A.
    Proteins; 2012 Apr 01; 80(4):1239-49. PubMed ID: 22275112
    [Abstract] [Full Text] [Related]

  • 12. Docking by structural similarity at protein-protein interfaces.
    Sinha R, Kundrotas PJ, Vakser IA.
    Proteins; 2010 Nov 15; 78(15):3235-41. PubMed ID: 20715056
    [Abstract] [Full Text] [Related]

  • 13. Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.
    Aytuna AS, Gursoy A, Keskin O.
    Bioinformatics; 2005 Jun 15; 21(12):2850-5. PubMed ID: 15855251
    [Abstract] [Full Text] [Related]

  • 14. Protein-protein complex structure predictions by multimeric threading and template recombination.
    Mukherjee S, Zhang Y.
    Structure; 2011 Jul 13; 19(7):955-66. PubMed ID: 21742262
    [Abstract] [Full Text] [Related]

  • 15. Blind predictions of protein interfaces by docking calculations in CAPRI.
    Lensink MF, Wodak SJ.
    Proteins; 2010 Nov 15; 78(15):3085-95. PubMed ID: 20839234
    [Abstract] [Full Text] [Related]

  • 16. DOCKGROUND resource for studying protein-protein interfaces.
    Douguet D, Chen HC, Tovchigrechko A, Vakser IA.
    Bioinformatics; 2006 Nov 01; 22(21):2612-8. PubMed ID: 16928732
    [Abstract] [Full Text] [Related]

  • 17. Protein docking using case-based reasoning.
    Ghoorah AW, Devignes MD, Smaïl-Tabbone M, Ritchie DW.
    Proteins; 2013 Dec 01; 81(12):2150-8. PubMed ID: 24123156
    [Abstract] [Full Text] [Related]

  • 18. SnapDock-template-based docking by Geometric Hashing.
    Estrin M, Wolfson HJ.
    Bioinformatics; 2017 Jul 15; 33(14):i30-i36. PubMed ID: 28881968
    [Abstract] [Full Text] [Related]

  • 19. Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
    Tuncbag N, Gursoy A, Keskin O.
    Bioinformatics; 2009 Jun 15; 25(12):1513-20. PubMed ID: 19357097
    [Abstract] [Full Text] [Related]

  • 20. HotSprint: database of computational hot spots in protein interfaces.
    Guney E, Tuncbag N, Keskin O, Gursoy A.
    Nucleic Acids Res; 2008 Jan 15; 36(Database issue):D662-6. PubMed ID: 17959648
    [Abstract] [Full Text] [Related]

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