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Journal Abstract Search

104 related items for PubMed ID: 24532727

  • 1. Condition-specific target prediction from motifs and expression.
    Meng G, Vingron M.
    Bioinformatics; 2014 Jun 15; 30(12):1643-50. PubMed ID: 24532727
    [Abstract] [Full Text] [Related]

  • 2. Discovery and validation of information theory-based transcription factor and cofactor binding site motifs.
    Lu R, Mucaki EJ, Rogan PK.
    Nucleic Acids Res; 2017 Mar 17; 45(5):e27. PubMed ID: 27899659
    [Abstract] [Full Text] [Related]

  • 3. Theoretical and empirical quality assessment of transcription factor-binding motifs.
    Medina-Rivera A, Abreu-Goodger C, Thomas-Chollier M, Salgado H, Collado-Vides J, van Helden J.
    Nucleic Acids Res; 2011 Feb 17; 39(3):808-24. PubMed ID: 20923783
    [Abstract] [Full Text] [Related]

  • 4. Differential motif enrichment analysis of paired ChIP-seq experiments.
    Lesluyes T, Johnson J, Machanick P, Bailey TL.
    BMC Genomics; 2014 Sep 02; 15(1):752. PubMed ID: 25179504
    [Abstract] [Full Text] [Related]

  • 5. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
    Niu M, Tabari ES, Su Z.
    BMC Genomics; 2014 Dec 02; 15():1047. PubMed ID: 25442502
    [Abstract] [Full Text] [Related]

  • 6. CAGER: classification analysis of gene expression regulation using multiple information sources.
    Ruan J, Zhang W.
    BMC Bioinformatics; 2005 May 12; 6():114. PubMed ID: 15890068
    [Abstract] [Full Text] [Related]

  • 7. Inferring condition-specific targets of human TF-TF complexes using ChIP-seq data.
    Yang CC, Chen MH, Lin SY, Andrews EH, Cheng C, Liu CC, Chen JJ.
    BMC Genomics; 2017 Jan 10; 18(1):61. PubMed ID: 28068916
    [Abstract] [Full Text] [Related]

  • 8. TFmotifView: a webserver for the visualization of transcription factor motifs in genomic regions.
    Leporcq C, Spill Y, Balaramane D, Toussaint C, Weber M, Bardet AF.
    Nucleic Acids Res; 2020 Jul 02; 48(W1):W208-W217. PubMed ID: 32324215
    [Abstract] [Full Text] [Related]

  • 9. Inferring direct DNA binding from ChIP-seq.
    Bailey TL, Machanick P.
    Nucleic Acids Res; 2012 Sep 01; 40(17):e128. PubMed ID: 22610855
    [Abstract] [Full Text] [Related]

  • 10. Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices.
    Oh YM, Kim JK, Choi S, Yoo JY.
    Nucleic Acids Res; 2012 Mar 01; 40(5):e38. PubMed ID: 22187154
    [Abstract] [Full Text] [Related]

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  • 12. Integrating genomic data to predict transcription factor binding.
    Holloway DT, Kon M, DeLisi C.
    Genome Inform; 2005 Mar 01; 16(1):83-94. PubMed ID: 16362910
    [Abstract] [Full Text] [Related]

  • 13. Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data.
    Dabrowski M, Dojer N, Krystkowiak I, Kaminska B, Wilczynski B.
    BMC Bioinformatics; 2015 May 01; 16():140. PubMed ID: 25927199
    [Abstract] [Full Text] [Related]

  • 14. ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor.
    Qin J, Li MJ, Wang P, Zhang MQ, Wang J.
    Nucleic Acids Res; 2011 Jul 01; 39(Web Server issue):W430-6. PubMed ID: 21586587
    [Abstract] [Full Text] [Related]

  • 15. PASTAA: identifying transcription factors associated with sets of co-regulated genes.
    Roider HG, Manke T, O'Keeffe S, Vingron M, Haas SA.
    Bioinformatics; 2009 Feb 15; 25(4):435-42. PubMed ID: 19073590
    [Abstract] [Full Text] [Related]

  • 16. Role of chromatin and transcriptional co-regulators in mediating p63-genome interactions in keratinocytes.
    Sethi I, Sinha S, Buck MJ.
    BMC Genomics; 2014 Nov 29; 15(1):1042. PubMed ID: 25433490
    [Abstract] [Full Text] [Related]

  • 17. Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution.
    Pan G, Tang J, Guo F.
    Sci Rep; 2017 Feb 27; 7():43597. PubMed ID: 28240320
    [Abstract] [Full Text] [Related]

  • 18. Co-regulation in embryonic stem cells via context-dependent binding of transcription factors.
    Lee Y, Zhou Q.
    Bioinformatics; 2013 Sep 01; 29(17):2162-8. PubMed ID: 23793746
    [Abstract] [Full Text] [Related]

  • 19. Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions.
    Van Nostrand EL, Kim SK.
    Genome Res; 2013 Jun 01; 23(6):941-53. PubMed ID: 23531767
    [Abstract] [Full Text] [Related]

  • 20. CisMapper: predicting regulatory interactions from transcription factor ChIP-seq data.
    O'Connor T, Bodén M, Bailey TL.
    Nucleic Acids Res; 2017 Feb 28; 45(4):e19. PubMed ID: 28204599
    [Abstract] [Full Text] [Related]

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